Pairwise Alignments

Query, 659 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 661 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  295 bits (755), Expect = 4e-84
 Identities = 201/662 (30%), Positives = 334/662 (50%), Gaps = 6/662 (0%)

Query: 3   LSIVQRIIAGFVLMLLLLILLGVISTLKIRGINDGLSEVSDRATPLVMAVAGLKEALQES 62
           ++I+QR+I GF +++LLL+ +  IS      I+D +S ++ ++ PL  A + L   +  +
Sbjct: 1   MTILQRVIGGFAVLVLLLLAMAGISYQSTHSISDRISVITGQSAPLSRAASELYVHVLRA 60

Query: 63  NRWVLEFRTSEEAGELPQLSNKFKDQQARFRQLSQQMNA-LTDSTESQKQFQDVLQATNQ 121
           N+ +L    S +  ++      F D   RF QL     A + D  E +       Q +  
Sbjct: 61  NQALLGILVSTDPKQIDDGKQPFNDSMTRFNQLLDSTPAYIGDRAELRDNLNQQRQLSAA 120

Query: 122 FYSQADQVLTQHSEWVNALAQRRKLE-IAFIRLEDTYQWAADLLLQQ-SSGQRSMRNKAE 179
           +  QA  ++  H + V    Q R L+  +  +      +  D + ++ ++G        E
Sbjct: 121 YAEQAQTLIASHRQHVLQALQSRVLQGYSSSQGAQLTGYLRDYIARERNAGSAETVAAGE 180

Query: 180 LITSGIARDLKNIRRADAKTDLNELEKVLSKDIEMARKRLDRVLVPDDVKARYIANL--N 237
            +   + +  + +    A  ++  L++VL+   E+   R  R L+  D +A  IA++  N
Sbjct: 181 KLLLDVGKSYEGLAAHAATPNIQTLQRVLNLQDEVISTRT-RELIAADPRAGRIASVMVN 239

Query: 238 RLQELALGQNGLLATMRKAQQLENALLIQNQQVDASLASSLAKLDDMAKYAGSIAQQSRM 297
           RL     G +G+    R+   L   +  Q Q  +  L ++L K+ +    + ++A +++ 
Sbjct: 240 RLLNDLTGSDGVYQAYRQEAALAEQVDKQRQAAETRLQATLGKIGEFGNQSLAVANEAKA 299

Query: 298 LADAAVSSANFWIMAVSAISAAVALVIGYTTARSIQKPLQKINHELAYMARGDMTRRINY 357
            AD+ ++++   ++    ++   A +IG   A S+++PL      L  +  GDM  R + 
Sbjct: 300 GADSTIATSLSLLLIACLLAVMAAAIIGTWVAFSLRRPLAAFREVLKTLTSGDMRVRFDV 359

Query: 358 PTRCEFGALSRSIDILADKTGELLSQINAGSRHLVNEASRSAEISERAMARVQEQKSQTD 417
             R EFG L   ++       +   Q+   +  L   AS++A+ISE+    V EQK + +
Sbjct: 360 SRRDEFGELGGYLNEFTQSLQQTFRQLIGSADTLALTASQNAQISEQTTRVVDEQKDRLN 419

Query: 418 QVAAAITELEVSATEVARSTDGAKDEVDRADAEAKQGRQKVATTRRITEQLASDMESAVG 477
             A+A+ E+E +  EVAR     +  VD       + +++VA T     Q A  +  A  
Sbjct: 420 SAASAMNEMESTVEEVARRAQDTRGAVDSTSELTGKVQKRVAETIVNIRQQAEQVNKASA 479

Query: 478 ITHKLGEFSNNIGSILDVIRGIAEQTNLLALNAAIEAARAGDAGRGFAVVADEVRALATR 537
           +T +L ++  NI  I+D IR IAEQTNLLALNAAIEAARAG+ GRGFAVVADEVR+LA+R
Sbjct: 480 VTDELQKYGQNIDGIVDAIRTIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASR 539

Query: 538 TQTSTEEIQHMIENLQESSKQVVEVMGRSQEQTRACVEQTREMDSALQSIADRMGAIKEM 597
           TQTST EIQ MI  +Q      VEVM  SQ Q+  CV      D  L  + + +  I++M
Sbjct: 540 TQTSTSEIQEMIGQMQSKIHSAVEVMNESQIQSDHCVTLASGADQLLVEMGEAVDVIRDM 599

Query: 598 ADQVAHAAQEQIVVSQSVAHHVTGIAEVAHETEREARESASSSEVLADLAAKQQQLIAHF 657
             Q+A A ++Q    Q  +  VT I + A +    A +SA SS+ L+ +A  Q++L+ HF
Sbjct: 600 NIQIAAATEQQSATVQETSRMVTHINDSAQQAADGAEQSAISSQDLSKMARDQRELLHHF 659

Query: 658 KV 659
            V
Sbjct: 660 SV 661