Pairwise Alignments

Query, 659 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 626 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  207 bits (527), Expect = 1e-57
 Identities = 179/672 (26%), Positives = 324/672 (48%), Gaps = 61/672 (9%)

Query: 3   LSIVQRIIAGFVLMLLLLILLG-----VISTLKIRG-INDGLSEVSDRATPLVMA--VAG 54
           +++  +++ GF L++L+++L+         TLK R  ++  +++ S  A  + +   V  
Sbjct: 1   MTVRAKLLVGFGLLILMILLMAYTGKDATDTLKRRAELSGDIAQFSSIARDMRIERLVYF 60

Query: 55  LKEALQESNRWVLEFRTSEEAGELPQLSNKFKDQQARFRQLSQQMNALTDSTESQKQFQD 114
           LK    ++++W+     +E   +L  +S +FK                 ++    K+ Q 
Sbjct: 61  LKADDAQASKWLEALERTER--QLVSISPRFKT---------------ANNIALLKEAQT 103

Query: 115 VLQATNQFYSQADQVLTQHSEWVNALAQRRKLEIAFIRLEDTYQWAADLLLQQSSGQRSM 174
            +Q    FY+++ +  T+  E +  LA      I  + L+              SG  + 
Sbjct: 104 TMQLYRGFYTRSVEA-TREREQLRTLAGASGETINGLLLKIAEA------ANDESGNAAD 156

Query: 175 RNKAELITSGIAR---DLKNIRRADAKTDLNELEKVLSKDIEMARKRLDRVLVPDDVKAR 231
           R K   +   + +     ++   + +K+  + + + +++ +       D  L   DV+A 
Sbjct: 157 RQKLPALFISVQKMRTAFRSYTASPSKSGEDTVRQAIAQVVASIDTLKDTSLPRADVQA- 215

Query: 232 YIANLNRLQELALGQ---NGLLATMRKAQQLENALLIQNQQVDASLASSLAKLDDMAKYA 288
                     LA G    +G L T+  AQ        +  +    + +S+A +  +    
Sbjct: 216 ----------LAAGMATYSGQLETLVAAQA-------KVDEAQGGITTSIATILGITDKM 258

Query: 289 GSIAQQSRML-ADAAVSSANFWIMAVSAISAAVALVIGYTTARSIQKPLQKINHELAYMA 347
            +I  + R   A+ A      W+     +SA + ++  +   RSI  PL++    +  +A
Sbjct: 259 TAIQNEFRASDAEKAQEKILLWL----GLSALLGVLAAWLITRSIVHPLKETVEIVEVVA 314

Query: 348 RGDMTRRINYPTRCEFGALSRSIDILADKTGELLSQINAGSRHLVNEASRSAEISERAMA 407
            GD T +       E GAL  S+  +      L+ ++  G   + + A + + ++E+  A
Sbjct: 315 EGDFTYKTQVTRNDELGALQGSMLRMTSGLRSLIGEMKDGIVQVASAAEQLSAVTEQTSA 374

Query: 408 RVQEQKSQTDQVAAAITELEVSATEVARSTDGAKDEVDRADAEAKQGRQKVATTRRITEQ 467
            V  QK +T+Q+A A+ ++  +  EV+R+   A +    A   A++G Q V  TR   E 
Sbjct: 375 GVNAQKLETEQIATAMQQMTATTHEVSRNAAQAVNTAQIASQLAQKGGQVVDRTRSQIET 434

Query: 468 LASDMESAVGITHKLGEFSNNIGSILDVIRGIAEQTNLLALNAAIEAARAGDAGRGFAVV 527
           LA +M         L   + +IG +LDVI+ +A+QTNLLALNAAIEAARAG+AGRGFAVV
Sbjct: 435 LAREMNMTRTAMAALRGNTQSIGGVLDVIKTVADQTNLLALNAAIEAARAGEAGRGFAVV 494

Query: 528 ADEVRALATRTQTSTEEIQHMIENLQESSKQVVEVMGRSQEQTRACVEQTREMDSALQSI 587
           ADEVR LA RT+TST+EI  +I  LQ S+  + +V+ ++   T + VE + +    LQSI
Sbjct: 495 ADEVRGLAVRTRTSTDEIALLINELQTSTDHMGQVLEQNLALTDSSVELSTQASEVLQSI 554

Query: 588 ADRMGAIKEMADQVAHAAQEQIVVSQSVAHHVTGIAEVAHETEREARESASSSEVLADLA 647
              +  I+ M +Q+A A ++Q  V + +   VT + +++ +T   + E+A+SS  LA ++
Sbjct: 555 TASVHEIEVMNEQIAVATEQQSNVGEEIGRGVTNVRDISDQTAAASEETATSSVELARVS 614

Query: 648 AKQQQLIAHFKV 659
           A+ Q++   FKV
Sbjct: 615 ARLQEMTNRFKV 626