Pairwise Alignments

Query, 659 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 638 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  239 bits (611), Expect = 2e-67
 Identities = 196/665 (29%), Positives = 329/665 (49%), Gaps = 48/665 (7%)

Query: 4   SIVQRIIAGFVLMLLLLILLGVISTLKIRGINDGLSEVSDRATPLVMAVAGLKEALQESN 63
           S+  ++  GF L+LL+ +++           N  L +  DR T           A+ E N
Sbjct: 13  SVSLKLAIGFGLVLLMTLMISATGWFS----NQALIDRGDRVT-----------AIAEVN 57

Query: 64  RWVLEFRTSEEAGEL---PQLSNKFKDQQARFRQLSQQMNALTDSTESQKQFQDVLQATN 120
              L+ R +  + E+    + + K +          Q    L  S E+ +     +QAT 
Sbjct: 58  ELTLQLRINRMSYEVLYNAETAAKVRSTLDELDAALQTARNLLRSPENLQLLDVQIQATR 117

Query: 121 QFYSQADQVLTQHSEWVNALAQRRKLEIAFIRLEDTYQWAADLLLQQSSGQRSMRNKAEL 180
             Y Q+ + +++  +   A ++ +  E A   ++   +  A+LL + +           L
Sbjct: 118 D-YRQSFEDMSKAIDTREA-SRSQMGENADKAVDQANRIEAELLKEDNI----------L 165

Query: 181 ITSGIARDLKNIRRADAK------TDLNELEKVLSKDIEMARKRLDRVLVPDDVKARYIA 234
             +GI    K I++A  +      +   + EK  +K I+ A   ++ +    D+ + Y  
Sbjct: 166 AFNGIVGVSKLIQQARFQVRGYTYSGRPDFEKDANKAIDDAVTGINTLA--GDISSTYSP 223

Query: 235 NLNRLQELALGQNGLLATMRKAQQLENALLIQNQQVDASLASSLAKLDDMAKYAGSIAQQ 294
               LQ+   G NG  A + K +  + A      ++     S LA  +D+      I +Q
Sbjct: 224 ---MLQQAIAGLNGYRAAVGKYRDAQAASKAALDKMTTLGVSMLATSNDL------ITRQ 274

Query: 295 SRMLADAAVSSANFWIMAVSAISAAVALVIGYTTARSIQKPLQKINHELAYMARGDMTRR 354
           ++   DA  + +   I+A +A++  + ++  +   R I  PLQ+    +  +A GD++R 
Sbjct: 275 NKS-RDADSAKSVQMIIAATALAMVLGILAAWVITRQITTPLQETLEVVERVASGDLSRN 333

Query: 355 INYPTRCEFGALSRSIDILADKTGELLSQINAGSRHLVNEASRSAEISERAMARVQEQKS 414
           +N   + E G L  +I  +     EL+  I  G   + + A   + ++E+  A V  QK 
Sbjct: 334 LNVDRKDELGKLQATIQRMTVSLRELVGGIRDGVTQIASAAEELSAVTEQTSAGVNSQKV 393

Query: 415 QTDQVAAAITELEVSATEVARSTDGAKDEVDRADAEAKQGRQKVATTRRITEQLASDMES 474
           +TDQVA A+ E+  +  EVAR+ + A +    AD +A+ G + V       E+LAS + +
Sbjct: 394 ETDQVATAMHEMTATVQEVARNAEEASEAAVAADRQARDGERVVNEAIAQIERLASAVGN 453

Query: 475 AVGITHKLGEFSNNIGSILDVIRGIAEQTNLLALNAAIEAARAGDAGRGFAVVADEVRAL 534
           +      L + S+ IGS+LDVI+ +AEQTNLLALNAAIEAARAG+AGRGFAVVADEVR+L
Sbjct: 454 SSEAMGALKQESDKIGSVLDVIKSVAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRSL 513

Query: 535 ATRTQTSTEEIQHMIENLQESSKQVVEVMGRSQEQTRACVEQTREMDSALQSIADRMGAI 594
           A RTQ STEEI+ +I  LQ  ++Q   VM  S+E + + VE TR    +L +I   + +I
Sbjct: 514 AQRTQKSTEEIEALIARLQSGTQQATTVMDSSRELSTSSVELTRRAGGSLANITKTVSSI 573

Query: 595 KEMADQVAHAAQEQIVVSQSVAHHVTGIAEVAHETEREARESASSSEVLADLAAKQQQLI 654
           + M  Q+A AA+EQ   ++ +   +  + +V+ +T   + E+A+SS  LA L    Q L+
Sbjct: 574 QAMNQQIAAAAEEQSATAEEINRSIINVRDVSEQTSAASEETAASSVELARLGNHLQVLV 633

Query: 655 AHFKV 659
           + F V
Sbjct: 634 SRFTV 638