Pairwise Alignments

Query, 659 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 647 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  233 bits (594), Expect = 2e-65
 Identities = 182/662 (27%), Positives = 328/662 (49%), Gaps = 42/662 (6%)

Query: 8   RIIAGFVLMLLLLILLGVISTLKIRGINDGLSEVSDRATPLVMAVAGLKEALQESNRWVL 67
           ++  GF L+LLL +++ +     +  + D    +SD     +  + GL + L+       
Sbjct: 17  KLSLGFGLVLLLTLIITLTGWHGLYTMIDRSESLSD-----IAQLNGLTKDLRAERITDR 71

Query: 68  EFRTSEEAGELPQLSNKFK----------DQQARFRQLSQQMNALTDSTESQKQFQDVLQ 117
             +T E    + +  N+ K          D++A  + L+ Q   L    ++    +D  Q
Sbjct: 72  VQKTPESTALVTEKLNEMKAQLTLLHKQSDEEATIKLLNGQFETLNRIEKTFADVRDNRQ 131

Query: 118 ATNQFYSQADQVLTQHSEWVNALAQRRKLEIAFIRLEDTYQWAADLLLQQSSGQRSMRNK 177
             NQ  ++ +Q   Q    + A+AQ   +E+  ++     Q +++ + ++ +    +R +
Sbjct: 132 TRNQIRTRLEQTSEQA---LQAIAQ---VEVEVLKSVSQEQDSSERM-EEFTNISQLRQQ 184

Query: 178 AELITSGIARDLKNIRRADAKTDLNELEKVLSKDIEMARKRLDRVLVPDDVKARYIANLN 237
            +     +       R AD    +  +++ L +  ++A+ + +  L          A L 
Sbjct: 185 VQTARYQVQTYTFTTRDADESAAIAAIDEALKEIGQIAQDQGNESL---QGLTPATAALQ 241

Query: 238 RLQELALGQNGLLATMRKAQQLENALLIQNQQVDASLASSLAKLDDMAKYAGSIAQQSRM 297
             +E  LG+   + T  +A          +Q++   L  +L  LD +    G++      
Sbjct: 242 SYRE-RLGEFKQIQTKAEA----------DQEIMEGLGETL--LDSV----GALNHLQTA 284

Query: 298 LADAAVSSANFWIMAVSAISAAVALVIGYTTARSIQKPLQKINHELAYMARGDMTRRINY 357
             D+  ++++  + +V+ ++  + L+  +   R I  PLQ+     A +A+GD++R I+ 
Sbjct: 285 QRDSEAANSSAMLSSVAGLALLIGLLAAWIMTRQITVPLQQTLSAAARIAQGDLSRDISV 344

Query: 358 PTRCEFGALSRSIDILADKTGELLSQINAGSRHLVNEASRSAEISERAMARVQEQKSQTD 417
             R E G L  S+  +     EL+  I+ G   + + A + + ++++    V  QK +TD
Sbjct: 345 TRRDEMGQLQGSMQTMTVSLRELVGGISEGVSQIASAAEQLSAVTKQTCIGVTSQKDETD 404

Query: 418 QVAAAITELEVSATEVARSTDGAKDEVDRADAEAKQGRQKVATTRRITEQLASDMESAVG 477
           QVA A+ E+  +  EVAR+   A     +AD +A+ G + V       EQLA ++ ++  
Sbjct: 405 QVATAMNEMAATVQEVARNAQEASQAAAQADQQARSGDEVVGQAITQIEQLAREVLNSTQ 464

Query: 478 ITHKLGEFSNNIGSILDVIRGIAEQTNLLALNAAIEAARAGDAGRGFAVVADEVRALATR 537
               L + SN I  +LDVI+ +++QTNLLALNAAIEAARAG+AGRGFAVVADEVR LA R
Sbjct: 465 SMSALKQESNKIVGVLDVIKSVSQQTNLLALNAAIEAARAGEAGRGFAVVADEVRGLAQR 524

Query: 538 TQTSTEEIQHMIENLQESSKQVVEVMGRSQEQTRACVEQTREMDSALQSIADRMGAIKEM 597
           TQ STEEI+ +I  LQ  ++QV   +  S+  T   VE +R    AL+ I   +  I+ M
Sbjct: 525 TQKSTEEIEELIAALQTGTQQVATTLDSSRTLTDNTVELSRRAGGALEQITRTVATIQHM 584

Query: 598 ADQVAHAAQEQIVVSQSVAHHVTGIAEVAHETEREARESASSSEVLADLAAKQQQLIAHF 657
            +Q+A A++EQ VV++ +  +V  + +++ +T   + ++A+SS  LA L    Q L+  F
Sbjct: 585 NEQIATASEEQSVVAEQINRNVISVRDISEQTAAASEQTAASSVELARLGTHLQTLVGKF 644

Query: 658 KV 659
           +V
Sbjct: 645 RV 646