Pairwise Alignments

Query, 659 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 673 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  306 bits (784), Expect = 2e-87
 Identities = 218/683 (31%), Positives = 367/683 (53%), Gaps = 34/683 (4%)

Query: 1   MGLSIVQRIIAGFVLMLLLLILLGVISTLKIRGINDGLSEVSDRATPLVMAVAGLKEALQ 60
           M + +  R+I GF  + LLL++LG  S +    + D  + + + + P + A   L E L 
Sbjct: 1   MKIKVATRVIGGFSFVTLLLVILGGASLVTNNNLKDSTAIMQELSMPALEATGHLSETLS 60

Query: 61  ESNRWVLEFRTSEEAGELPQLSNKFKDQQARFRQLSQQMNALTDSTESQKQFQDVLQATN 120
           E  R +L+   S+ +  +P L   F    + F   + Q   L+    ++  FQ  L   +
Sbjct: 61  EQQRLILKAFHSKNSSTVPGLERTFDQLSSGF---NNQFTLLSGLLNNRDNFQGQLSGLS 117

Query: 121 QFYSQADQVLTQHSEWV-----NALAQRRKLEIAFIRLEDTYQWAA----DLLLQQSSGQ 171
             Y    QVL  +S+ +     ++L+Q+ +L     +LE++   A+    DL+  +SS  
Sbjct: 118 SSY----QVLESNSKAMLKARFDSLSQQEELLKLREKLENSADDASSNLFDLIDLESSQN 173

Query: 172 RSMRNKA------ELITSGIARDLKNIRRADAKTDLNELEKVLSKDIEMARKRLDRVLVP 225
           ++ R  A      +   +GI   + ++  A+ ++    + K L   +   + +++ +   
Sbjct: 174 QTEREIAAAAGAIDTTMTGIITTVYDLVAAEERSKYELISKELDYMLGEVKTKMEYISRH 233

Query: 226 DD--VKARYIANLN----RLQELALGQNGLLATMRKAQQLENALLIQNQQVDASLASSLA 279
            +  + A  ++ LN    ++ ++  G++ L+    K++Q+++  L  ++++     ++L 
Sbjct: 234 GEGIIDADLVSTLNDDSTKVLKMLEGKDTLVTL--KSRQIDSTQLT-SEKLTLVEKNALT 290

Query: 280 KLDDMAKYAGSIAQQSRMLADAA---VSSANFWIMAVSAISAAVALVIGYTTARSIQKPL 336
             + M + A  I   +  +++ A   ++SA+   + +  I+  VA+VI +   R +++ L
Sbjct: 291 VTEQMKRLAKDIETVTNDISNQALNDINSASLRTLILVVIAIVVAVVISFAVVRPLKRSL 350

Query: 337 QKINHELAYMARGDMTRRINYPTRCEFGALSRSIDILADKTGELLSQINAGSRHLVNEAS 396
            ++N  L  +A GD+T +++     EF  LSR+ + L D    L++ I   S  L   A 
Sbjct: 351 DEVNGALNVLASGDLTHKLDDTGHDEFAELSRNCNRLVDSLRSLIASILDRSNQLAAAAE 410

Query: 397 RSAEISERAMARVQEQKSQTDQVAAAITELEVSATEVARSTDGAKDEVDRADAEAKQGRQ 456
            ++ I+ +    +QEQKSQ DQVA A TEL  SA +V  S D A  ++ +AD E +  R 
Sbjct: 411 ETSAITSQTTIGIQEQKSQVDQVATATTELSSSAHQVNMSADDALSQIKQADEETQHMRT 470

Query: 457 KVATTRRITEQLASDMESAVGITHKLGEFSNNIGSILDVIRGIAEQTNLLALNAAIEAAR 516
                +R    LA ++  A  + +K+   S +IGSILDVIRGIAEQTNLLALNAAIEAAR
Sbjct: 471 IADENKRTILSLADEVAKASKVINKVHSDSASIGSILDVIRGIAEQTNLLALNAAIEAAR 530

Query: 517 AGDAGRGFAVVADEVRALATRTQTSTEEIQHMIENLQESSKQVVEVMGRSQEQTRACVEQ 576
           AG+ GRGFAVVADEVR+LA+RTQ ST EIQ MIE LQ+ ++Q V VM   Q Q ++CVE+
Sbjct: 531 AGEQGRGFAVVADEVRSLASRTQDSTREIQQMIEVLQQGTQQAVAVMQLGQNQAQSCVEK 590

Query: 577 TREMDSALQSIADRMGAIKEMADQVAHAAQEQIVVSQSVAHHVTGIAEVAHETEREARES 636
           T + + ALQ+I+  +    +    +A AAQEQ +VSQ V+  +  IA ++ ET   A ++
Sbjct: 591 TEQANQALQTISHSVHKAYDAGTHIAQAAQEQNLVSQQVSEKLEHIAAISEETALGAEQT 650

Query: 637 ASSSEVLADLAAKQQQLIAHFKV 659
           A SS  +A LA + Q  +  F+V
Sbjct: 651 AKSSHEVARLAEELQSSVKEFRV 673