Pairwise Alignments

Query, 659 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  202 bits (513), Expect = 4e-56
 Identities = 125/368 (33%), Positives = 194/368 (52%), Gaps = 1/368 (0%)

Query: 291 IAQQSRMLADAAVSSANFWIMAVSAISAAVALVIGYTTARSIQKPLQKINHELAYMA-RG 349
           IA   R   +   SS+  W + ++  +  +    G    R +  P+ +I  +L  +  + 
Sbjct: 172 IADLEREQVETLHSSSLKWFIGLAVFAVLITSFFGVWVNRGVMTPVTEIRQKLRQIREKS 231

Query: 350 DMTRRINYPTRCEFGALSRSIDILADKTGELLSQINAGSRHLVNEASRSAEISERAMARV 409
           DMT         E G +++ ++ + +    +L  I   +  L + A    E + +A  R+
Sbjct: 232 DMTVSFTVFRDDELGHIAKDLNGVVNHLKGILKNIAEAASTLGDSADELNEFTRQANDRM 291

Query: 410 QEQKSQTDQVAAAITELEVSATEVARSTDGAKDEVDRADAEAKQGRQKVATTRRITEQLA 469
            +Q+S+T+Q A A+ E+  +  EVA+S++ A +    AD  A +G   V  +      LA
Sbjct: 292 FKQQSETEQTATAMNEMTAAVAEVAQSSNSAAESARNADESAARGNSIVQQSISSMSVLA 351

Query: 470 SDMESAVGITHKLGEFSNNIGSILDVIRGIAEQTNLLALNAAIEAARAGDAGRGFAVVAD 529
           S ++    +  +L   S NIG +LDVI+ IAEQTNLLALNAAIEAARAG+ GRGFAVVAD
Sbjct: 352 SQIQGTAAVIGELATESQNIGRVLDVIKSIAEQTNLLALNAAIEAARAGEQGRGFAVVAD 411

Query: 530 EVRALATRTQTSTEEIQHMIENLQESSKQVVEVMGRSQEQTRACVEQTREMDSALQSIAD 589
           EVR LA RT  ST EI+ MIE+LQ+  K  V  M +   Q     E T    SALQ I  
Sbjct: 412 EVRTLAQRTSESTREIESMIESLQQGVKSAVNSMEQGIAQVDNANESTNAAGSALQDIVA 471

Query: 590 RMGAIKEMADQVAHAAQEQIVVSQSVAHHVTGIAEVAHETEREARESASSSEVLADLAAK 649
            + +I ++   +A AA EQ  V++S+   +  I+++A E+ + A + + +   LA LA  
Sbjct: 472 SVDSITQLNTHIATAADEQSCVAESINQSIIAISDIAQESTQAANDLSEAVHQLAQLAGH 531

Query: 650 QQQLIAHF 657
            +  +  F
Sbjct: 532 MRTQVGTF 539



 Score = 40.0 bits (92), Expect = 3e-07
 Identities = 111/554 (20%), Positives = 204/554 (36%), Gaps = 92/554 (16%)

Query: 3   LSIVQRIIAGFVLMLLLLILLGVISTLKIRGINDGLSEV-SDRATPL-----------VM 50
           L I  +++ GF + +LLLI++  +S   +  I DG+  + +DR  PL           V 
Sbjct: 4   LQIKHKMLLGFFIPVLLLIIVCGVSMSIMSKIEDGVLRIYNDRVVPLEDLKLIGDDYAVS 63

Query: 51  AVAGLKEA------LQESNRWVLEFRTS-------EEAGELPQLSNKFKDQ-QARFRQLS 96
            +  + +A       +E+   ++E + +         + EL     K   Q Q  F   +
Sbjct: 64  VIDAINKANAGGFSAEEARNGLIEAKKNIASRWDKYMSTELTADEQKLASQTQQLFAPAN 123

Query: 97  QQMNALTDSTESQK-----QFQ-DVLQ---------------ATNQFY---SQADQVLTQ 132
           QQ+  L D    +      QF  D++                 T Q +    + +QV T 
Sbjct: 124 QQIQLLIDKLSGKSGSVTGQFSADIIPLYQVIDPISGKVAELVTLQIHIADLEREQVETL 183

Query: 133 HS---EWVNALAQRRKLEIAFIRLEDTYQWAADLLLQQSSGQRSMRNKAELITS-GIARD 188
           HS   +W   LA    L  +F  +    +     + +     R +R K+++  S  + RD
Sbjct: 184 HSSSLKWFIGLAVFAVLITSFFGVW-VNRGVMTPVTEIRQKLRQIREKSDMTVSFTVFRD 242

Query: 189 --LKNIRRADAKTDLNELEKVLSKDIEMARKRLDRVLVPDD----VKARYIANLNRLQEL 242
             L +I + D    +N L+ +L    E A    D     ++       R     +  ++ 
Sbjct: 243 DELGHIAK-DLNGVVNHLKGILKNIAEAASTLGDSADELNEFTRQANDRMFKQQSETEQT 301

Query: 243 ALGQNGLLATMRKAQQLENALLIQNQQVDASLASSLAKLDDMAKYAGSIAQQS----RML 298
           A   N + A + +  Q  N           S A S    D+ A    SI QQS     +L
Sbjct: 302 ATAMNEMTAAVAEVAQSSN-----------SAAESARNADESAARGNSIVQQSISSMSVL 350

Query: 299 ADAAVSSANFWIMAVSAISAAVALVIGYTTARSIQKPLQKINHELAYMARGDMTRRINYP 358
           A     +A   I  ++  S  +  V+    + + Q  L  +N  +     G+  R     
Sbjct: 351 ASQIQGTAAV-IGELATESQNIGRVLDVIKSIAEQTNLLALNAAIEAARAGEQGR----- 404

Query: 359 TRCEFGALSRSIDILADKTGELLSQINAGSRHLVNEASRSAEISERAMARVQEQKSQTDQ 418
               F  ++  +  LA +T E   +I +    L      +    E+ +A+V      T+ 
Sbjct: 405 ---GFAVVADEVRTLAQRTSESTREIESMIESLQQGVKSAVNSMEQGIAQVDNANESTNA 461

Query: 419 VAAAITELEVSATEVARSTDGAKDEVDRADAEAKQGRQKVATTRRITE---QLASDMESA 475
             +A+ ++  S   + +         D     A+   Q +     I +   Q A+D+  A
Sbjct: 462 AGSALQDIVASVDSITQLNTHIATAADEQSCVAESINQSIIAISDIAQESTQAANDLSEA 521

Query: 476 VGITHKLGEFSNNI 489
           V   H+L + + ++
Sbjct: 522 V---HQLAQLAGHM 532