Pairwise Alignments

Query, 659 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 620 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  208 bits (530), Expect = 5e-58
 Identities = 155/495 (31%), Positives = 258/495 (52%), Gaps = 33/495 (6%)

Query: 175 RNKAELITSGIARDLKNIRRADAKTDLNELEKVLSK---DIEMARKRLDRVLVPDDVKAR 231
           +N+ EL+ +     +  +RR +    L      L K   ++ + R+++   ++ D VK  
Sbjct: 149 KNEPELMVT-----MLQLRRNEKDFMLRRAMSYLDKFKGNLALLRQQVSGAMLSDSVKGE 203

Query: 232 YIANLNRLQELALGQNGLLATMRKAQQLENALLIQNQQVDASLASSLAKLDDMAKYAGSI 291
             A ++  ++         A + K Q+L          +D    S  +  D ++    S+
Sbjct: 204 LNALIDDYEK------NFKALVSKEQELG---------LDKDSGSMASLRDSISSAEKSL 248

Query: 292 AQQSRMLADAAVSSANFWIMAVSAISAAVALV-IGYTTA--RSIQKPLQKINHELAYM-A 347
            Q      DA   + +  +     +   + LV IG+T A  RSI +P+Q+I+  ++ + A
Sbjct: 249 VQLKAQSMDAISDAESATVTISIVVFILITLVLIGFTLAIIRSIMEPVQRISDAISRIEA 308

Query: 348 RGDMTRRINYPTRCEFGALSRSIDILADKTGELLSQINAGSRHLVNEASRSAEISERAMA 407
             D+T R +     E G ++R  + + +    L+ ++      + +     +E S RA  
Sbjct: 309 TKDLTLRCDTKVDDEIGQIARHFNSMVESFQSLIREVLTSVEVVNHSCQELSENSMRASE 368

Query: 408 RVQEQKSQTDQVAAAITELEVSATEVARSTDGAKDEVDRADAEAKQGRQKVATTRRITEQ 467
            V  Q ++TD VA AITE+  +  E+A +T+ A +        A+QG+  V  T    + 
Sbjct: 369 GVGRQLNETDMVATAITEMGATIDEIASNTELAAERAGNTHDNAQQGQVGVEHTIEKIQA 428

Query: 468 LASDMESAVGITHKLGEFSNNIGSILDVIRGIAEQTNLLALNAAIEAARAGDAGRGFAVV 527
           LA+ +  +  +  +L + S  IGS+LDVIRGIAEQTNLLALNAAIEAARAG+ GRGFAVV
Sbjct: 429 LAAQLTDSAQVVSELEKDSETIGSVLDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVV 488

Query: 528 ADEVRALATRTQTSTEEIQHMIENLQESSKQVVEVMGRSQEQTRACVEQTREMDSALQSI 587
           ADEVR+LA RTQ STEEI  +I+ LQ  ++ +V++M  +Q Q     +Q     + L+ I
Sbjct: 489 ADEVRSLAMRTQESTEEIAGIIQTLQSRTRSIVQLMEATQRQGIESADQAASAGALLEQI 548

Query: 588 ADRMGAIKEMADQVAHAAQEQIVVSQSVAHHVTGIAEVAHETEREARESASSSEVLADLA 647
              +  I +M+ Q+A A +EQ +V+  V  +V  I ++A E+ + A E+A +S+   D+ 
Sbjct: 549 NADVTNIMDMSTQIAAAIEEQSMVASEVNKNVVVIRDIAAESAQAADENAKASD---DVK 605

Query: 648 AKQQ---QLIAHFKV 659
           A+ Q   Q ++ FK+
Sbjct: 606 ARTQVLYQAVSLFKI 620