Pairwise Alignments

Query, 659 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 548 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  191 bits (486), Expect = 6e-53
 Identities = 129/353 (36%), Positives = 196/353 (55%), Gaps = 3/353 (0%)

Query: 309 WIMAVSAISAAVALVIGYTTARSIQKPLQKINHELAYMARG--DMTRRINYPTRCEFGAL 366
           +++   A+   V L++G   +RSI  P+         +ARG  D+T R+    R E   +
Sbjct: 197 YLLICIAVWLPVILILG-VISRSISAPMADTIAAFENIARGEGDLTLRLEESGRDELKQV 255

Query: 367 SRSIDILADKTGELLSQINAGSRHLVNEASRSAEISERAMARVQEQKSQTDQVAAAITEL 426
           + S +    K   L++ ++A   H    A   A+IS +A       +++T  VA AI E+
Sbjct: 256 AASFNEFVAKIQALVNSVSASVTHSRELAEGLADISAQASMVTANMQAETQSVATAINEM 315

Query: 427 EVSATEVARSTDGAKDEVDRADAEAKQGRQKVATTRRITEQLASDMESAVGITHKLGEFS 486
            ++++EVA +   A D    AD EA      V       + L++++E        L   S
Sbjct: 316 SMASSEVASNAQLAADSAGSADGEADDTVAVVDGAVAKIKGLSNELEVTADEAQALQISS 375

Query: 487 NNIGSILDVIRGIAEQTNLLALNAAIEAARAGDAGRGFAVVADEVRALATRTQTSTEEIQ 546
             IG ILDVI GIAEQTNLLALNAAIEAARAG+AGRGFAVVADEVR LA+RTQ ST+EI 
Sbjct: 376 GKIGQILDVIVGIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRTLASRTQESTQEIN 435

Query: 547 HMIENLQESSKQVVEVMGRSQEQTRACVEQTREMDSALQSIADRMGAIKEMADQVAHAAQ 606
            +IE ++ S   V   + R++ Q+   V +T ++  ALQ+I   +  I +M  Q+A A +
Sbjct: 436 AIIEAIRASVDSVNASVARAKAQSEQTVGETSQVVEALQTIKSSIRQISDMNIQIATATE 495

Query: 607 EQIVVSQSVAHHVTGIAEVAHETEREARESASSSEVLADLAAKQQQLIAHFKV 659
           EQ  V   +  +VT I +++ E ++++ E  S+SE +   +A  + LI+ FK+
Sbjct: 496 EQSAVIAELNMNVTRINDISLENQQKSEEIGSTSEQIKSGSADLESLISTFKL 548