Pairwise Alignments

Query, 659 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 674 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  303 bits (776), Expect = 2e-86
 Identities = 223/682 (32%), Positives = 359/682 (52%), Gaps = 31/682 (4%)

Query: 1   MGLSIVQRIIAGFVLMLLLLILLGVISTLKIRGINDGLSEVSDRATPLVMAVAGLKEALQ 60
           M L++  R+I GF ++ LLLI+LGV S +    I      + D + P + +  GL + L 
Sbjct: 1   MKLNVATRVIGGFSVVTLLLIVLGVASLVTNDNIKSSTLVLQDLSLPALKSSNGLTQNLA 60

Query: 61  ESNRWVLEFRTSEEAGELPQLSNKFKDQQARFRQLSQQMNALTDSTESQKQFQ-DVLQAT 119
              + +L    S+++ ELPQ+ ++F      F     Q+N +    E     Q   L+A 
Sbjct: 61  LQEKQLLVAFHSKQSKELPQVRSQFTSLSKGFITELDQLNRIIQGHEDNLGGQIKSLRAN 120

Query: 120 NQFYSQADQVLTQHSEWVNALAQRRKLEIAFIRLEDTYQWAADLLLQ-------QSSGQR 172
            Q ++     + Q  E   +L  +  L      LE      A LLL        Q   +R
Sbjct: 121 YQSFNDNSLKMMQARE--QSLQTQESLVDNLESLEGAADDTASLLLDLIDLETSQDPTER 178

Query: 173 SMRNKAELITSGIAR------DLKNIR-RADAKTDLNELEKVLSKDIEMARKRLDRV--- 222
            +   A  I +  +       DL N + ++  +T L EL+ ++S+    A+ +L+ V   
Sbjct: 179 EIAATASNIDNSFSNLITSSYDLVNAKEKSKYETILKELDYIISE----AQNKLEYVSRH 234

Query: 223 ---LVPDDVKARYIANLNRLQELALGQNGLLATMRKAQQLENALLIQN--QQVDASLASS 277
              ++  +         +++  +  G + +L   RK QQL+  L        V+++  + 
Sbjct: 235 WEGVIDQEALDNINTEASKVFTMLNGPDSILK--RKGQQLDFNLQASQLLNTVESNATAV 292

Query: 278 LAKLDDMAKYAGSIAQQSRMLADAAVSSANFWIMAVSAISAAVALVIGYTTARSIQKPLQ 337
              +  + K   S +Q   + A   + SA++  +A+  I+  VA+++     R ++  L 
Sbjct: 293 NQSMGSLNKAIESTSQAVSVKAIDEIDSASYKTLALVLIAIVVAVLVSIAVIRPLKNSLD 352

Query: 338 KINHELAYMARGDMTRRINYPTRCEFGALSRSIDILADKTGELLSQINAGSRHLVNEASR 397
           K+N+ L  +A G++T +++     EF  LSR+ + L D    L+  I   S  L   A  
Sbjct: 353 KVNNALNILASGNLTHKLDDSGHDEFAELSRNCNRLVDSLRTLIQGILDRSNQLAAAAEE 412

Query: 398 SAEISERAMARVQEQKSQTDQVAAAITELEVSATEVARSTDGAKDEVDRADAEAKQGRQK 457
           ++ I+ +  A +QEQK+Q DQVA A T+L  SA +V+ S D A +++ +AD EA+  R  
Sbjct: 413 TSAITAQTTAGIQEQKNQVDQVATATTQLSSSAMQVSTSADEALNQIRQADEEAQHMRAI 472

Query: 458 VATTRRITEQLASDMESAVGITHKLGEFSNNIGSILDVIRGIAEQTNLLALNAAIEAARA 517
               +R    LA ++  A  + +K+   S +IGSILDVIRGIAEQTNLLALNAAIEAARA
Sbjct: 473 ADENKRTILALADEVAKAGQVINKVHSDSASIGSILDVIRGIAEQTNLLALNAAIEAARA 532

Query: 518 GDAGRGFAVVADEVRALATRTQTSTEEIQHMIENLQESSKQVVEVMGRSQEQTRACVEQT 577
           G+ GRGFAVVADEVR+LA+RTQ ST+EIQ MI+ LQ+ +++ V VM   ++Q  +CVE+T
Sbjct: 533 GEQGRGFAVVADEVRSLASRTQDSTQEIQQMIQVLQQGTQEAVSVMELGRQQANSCVEKT 592

Query: 578 REMDSALQSIADRMGAIKEMADQVAHAAQEQIVVSQSVAHHVTGIAEVAHETEREARESA 637
            + + AL+SI++ +    +    +A+AAQEQ +VSQ V+  +  IA ++ ET   A ++A
Sbjct: 593 EQANVALESISNAVHYAHDSGTHIANAAQEQNLVSQQVSEKLEHIAAISEETATGADQTA 652

Query: 638 SSSEVLADLAAKQQQLIAHFKV 659
            SS  +A LA + Q  +  FKV
Sbjct: 653 QSSHQVAQLAEELQASVGEFKV 674