Pairwise Alignments

Query, 659 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 640 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  200 bits (508), Expect = 2e-55
 Identities = 121/363 (33%), Positives = 206/363 (56%), Gaps = 10/363 (2%)

Query: 302 AVSSANFWIMAVSAISAAVALVIGYTTARSIQKPLQKINHELAYMAR------GDMTRRI 355
           A++ A++ +  +  I AA+ +   +T+A  I + +     ELA M +      GD++ R+
Sbjct: 281 AINKASWQLALMGLILAAIIM---FTSAWLINRLISPFG-ELADMLKSIGEGEGDLSLRL 336

Query: 356 NYPTRCEFGALSRSIDILADKTGELLSQINAGSRHLVNEASRSAEISERAMARVQEQKSQ 415
           +   + E G+++ S +       + L  ++A +  L     R    ++     + +Q S+
Sbjct: 337 DDSRQDETGSMAASYNQFVTYLSKTLQSVSATANDLFQAVERIDNQAKHMEHEINDQVSK 396

Query: 416 TDQVAAAITELEVSATEVARSTDGAKDEVDRADAEAKQGRQKVATTRRITEQLASDMESA 475
            +QVA AI E+ ++A E+A S + A +    AD    QG Q V  T      ++  + + 
Sbjct: 397 IEQVATAIHEMGMTAQEIASSANNAAENAQVADQSVNQGNQSVQNTIASVASMSEQLLTT 456

Query: 476 VGITHKLGEFSNNIGSILDVIRGIAEQTNLLALNAAIEAARAGDAGRGFAVVADEVRALA 535
                +L E +++I ++L+VIRG++EQTNLLALNAAIEAARAG+ GRGFAVVADEVR LA
Sbjct: 457 SETVSQLAEDASSIDTVLEVIRGVSEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLA 516

Query: 536 TRTQTSTEEIQHMIENLQESSKQVVEVMGRSQEQTRACVEQTREMDSALQSIADRMGAIK 595
           +R+  STE+I+H+IE LQ  + +VV  +G+S  Q++   ++       L SIA+ + A+ 
Sbjct: 517 SRSHASTEDIRHIIEKLQAKTTEVVNAIGQSTNQSQQSQQEASLSGEHLHSIAENIQAMS 576

Query: 596 EMADQVAHAAQEQIVVSQSVAHHVTGIAEVAHETEREARESASSSEVLADLAAKQQQLIA 655
           EM+ Q+A A +EQ  V   +  HVT IA+++  +    R+++     L ++A +  +L++
Sbjct: 577 EMSMQIATATEEQSNVVGEINPHVTAIADISRSSSDVVRQTSLDCSDLREMAVQLNELVS 636

Query: 656 HFK 658
            FK
Sbjct: 637 RFK 639