Pairwise Alignments

Query, 659 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 546 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  206 bits (523), Expect = 3e-57
 Identities = 145/487 (29%), Positives = 253/487 (51%), Gaps = 31/487 (6%)

Query: 198 KTDLNELEKVLSKD---IEMARKRLDRVLVPDDVKARYIANLNRLQE------LALGQ-- 246
           + +LN +  V++ D   IE++++R +      +  A+  A LN + E      + LG+  
Sbjct: 66  RNELNMVIDVMTHDSAAIEISKQRFETAKSEFEAGAQQYAKLNFVSEQDEQLFIKLGEAA 125

Query: 247 -------NGLLAT-----MRKAQQLENALLIQNQQVDASLASSLAKLDDMAKYAGSIAQQ 294
                  + L++      M  A  +   L  Q  +V      +L   +D A      AQ+
Sbjct: 126 EKYFSAHSSLVSAIDQGDMASANIMIKTLTRQTLEVAGEETMNLRHENDRA------AQE 179

Query: 295 SRMLADAAVSSANFWIMAVSAISAAVALVIGYTTARSIQKPLQKINHELAYMARGDMTRR 354
             + ++ A  +A    + V   +    +V+ +   R IQ P+  +  +   ++ G++T +
Sbjct: 180 MVLQSENAYKTAKMLSIIVGFSTIFFVVVMAFLLIRQIQNPIMWLLKQTHEVSAGNLTNK 239

Query: 355 INYPT--RCEFGALSRSIDILADKTGELLSQINAGSRHLVNEASRSAEISERAMARVQEQ 412
           +N     R EFG L+ S + + D    L+S+++     L + A   + ++  +   ++ Q
Sbjct: 240 LNMNAFARDEFGQLAESFNEMQDNLHMLVSEVSNSIVQLSSAAEEISSVALHSSNNMETQ 299

Query: 413 KSQTDQVAAAITELEVSATEVARSTDGAKDEVDRADAEAKQGRQKVATTRRITEQLASDM 472
           +++ +Q+A A+ E++ +  +VAR+T+ A +   +A   A QG + V  +    +++A  +
Sbjct: 300 QNELNQLATAMHEMQATVQDVARNTNDAANAATQASDTATQGSETVNDSIVRIDKVAGAI 359

Query: 473 ESAVGITHKLGEFSNNIGSILDVIRGIAEQTNLLALNAAIEAARAGDAGRGFAVVADEVR 532
           E+   +  KLG+ S NIG +L+VI+GIAEQTNLLALNAAIEAARAG+ GRGFAVVADEVR
Sbjct: 360 EATAVVIRKLGDDSRNIGMVLEVIQGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR 419

Query: 533 ALATRTQTSTEEIQHMIENLQESSKQVVEVMGRSQEQTRACVEQTREMDSALQSIADRMG 592
            LA RTQ ST  I  +I  LQ  + +  E M +SQE     V + RE   ++  I+  + 
Sbjct: 420 TLAKRTQDSTSHINSIISELQLRANEAEETMQQSQEMMIETVCKAREAGESIAKISSSVS 479

Query: 593 AIKEMADQVAHAAQEQIVVSQSVAHHVTGIAEVAHETEREARESASSSEVLADLAAKQQQ 652
            I +M  Q+A A +EQ  VS+ +  +V  I+  + +    A++ A +   L+ LA + Q 
Sbjct: 480 CISQMNIQIATATEEQGAVSEELNRNVANISGASEDVATGAKQMAMACNDLSHLATQLQD 539

Query: 653 LIAHFKV 659
           ++  F +
Sbjct: 540 MVKKFHI 546