Pairwise Alignments

Query, 659 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 634 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  213 bits (543), Expect = 2e-59
 Identities = 129/366 (35%), Positives = 196/366 (53%), Gaps = 2/366 (0%)

Query: 296 RMLADAAVSSANFWIMAVSAISAAVALVIGYTTARSIQKPLQKINHELAYMARG--DMTR 353
           R  ++ A+S   F ++ +  I+  +   I +  A+SI +P+ +  + L  +A G  D+TR
Sbjct: 269 RSHSEQAMSDIRFKLIMIGFIAFLIGTAIAWFIAKSITRPIAETTNALNDIAEGEGDLTR 328

Query: 354 RINYPTRCEFGALSRSIDILADKTGELLSQINAGSRHLVNEASRSAEISERAMARVQEQK 413
           RI   ++ E   L+ + +  A+K    ++Q++  +  L   A   + I+       + Q 
Sbjct: 329 RIEVKSKDEIAQLALAFNRFAEKIHATVAQVSDSTSLLATSAEEMSAITNETQQMAKRQH 388

Query: 414 SQTDQVAAAITELEVSATEVARSTDGAKDEVDRADAEAKQGRQKVATTRRITEQLASDME 473
            +T+QVA A+ E+  +  EVA +   A D    A    + G+  V         LA ++ 
Sbjct: 389 LETEQVATAMNEMAATVQEVAHNATDAADAATHASESTEHGKLLVEKVISTISLLADEIA 448

Query: 474 SAVGITHKLGEFSNNIGSILDVIRGIAEQTNLLALNAAIEAARAGDAGRGFAVVADEVRA 533
            A    ++L   +  I S+L VIR IA+QTNLLALNAAIEAARAG+ GRGFAVVADEVR 
Sbjct: 449 HAAKAINELERNTAQIDSVLVVIRNIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRT 508

Query: 534 LATRTQTSTEEIQHMIENLQESSKQVVEVMGRSQEQTRACVEQTREMDSALQSIADRMGA 593
           LA+RTQ ST EIQ MIE LQ S+K  V  M  S   T+ CV    E   AL++I   +  
Sbjct: 509 LASRTQASTSEIQQMIEALQHSAKSTVSTMNTSTATTQNCVSLVHEAGEALEAITQAVST 568

Query: 594 IKEMADQVAHAAQEQIVVSQSVAHHVTGIAEVAHETEREARESASSSEVLADLAAKQQQL 653
           I +M  Q+A AA EQ  VS  +  +V  I ++       A ++A + + LA L+ +   L
Sbjct: 569 ISQMNIQIASAANEQCAVSAEINKNVNNINDITINATESAVQTARAGDELAQLSMRLTTL 628

Query: 654 IAHFKV 659
           +A F++
Sbjct: 629 LAQFRI 634