Pairwise Alignments

Query, 659 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 620 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  213 bits (543), Expect = 2e-59
 Identities = 149/424 (35%), Positives = 241/424 (56%), Gaps = 14/424 (3%)

Query: 246 QNGLLATMRKAQQLENALLIQNQQVDAS-LASSLAKLDDMAKYAGSIAQQSRMLADAAV- 303
           QN + A + + Q+   +L+ + QQ+       ++A+L    +   S A +   LA  A+ 
Sbjct: 201 QNKIAALIDQYQKDFKSLVSKEQQLGLDEKQGTMAQLVAANRLTESSADELHNLALKAID 260

Query: 304 ----SSANFWIMAVSAISAAVALVIGYTTARSIQKPLQKINHELAYM-ARGDMTRRINYP 358
               SS N  I  V  I A +  +I Y   RSI  P+++I   ++ +    D+T R +  
Sbjct: 261 ETENSSRNIGI-TVFLIIALILGIITYLIIRSIITPVERITQVISRIEVSKDLTLRCDAS 319

Query: 359 TRCEFGALSRSIDILADKTGELLSQINAGSRHLVNEASRSAEISERAMAR---VQEQKSQ 415
           T+ E G +++  + +     +L+ Q+   S   +N +S+S  +S+ AM     V +Q ++
Sbjct: 320 TQDELGEIAQHFNSMVGSFQQLIEQV-IESVATINTSSKS--VSQNAMLASEGVAQQLNE 376

Query: 416 TDQVAAAITELEVSATEVARSTDGAKDEVDRADAEAKQGRQKVATTRRITEQLASDMESA 475
           TD VA AITE+  +  E+A++T+ A  +  +    A+ G+ +V  T     QL+  + ++
Sbjct: 377 TDMVATAITEMGATIDEIAKTTELAALKAGKTHDNAQLGQSEVEQTILKIRQLSEQINTS 436

Query: 476 VGITHKLGEFSNNIGSILDVIRGIAEQTNLLALNAAIEAARAGDAGRGFAVVADEVRALA 535
             +  +L   S  IGS+LDVIRGIAEQTNLLALNAAIEAARAG+ GRGFAVVADEVR+LA
Sbjct: 437 ASVVDELERDSETIGSVLDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLA 496

Query: 536 TRTQTSTEEIQHMIENLQESSKQVVEVMGRSQEQTRACVEQTREMDSALQSIADRMGAIK 595
            RTQ+ST+EI ++I+ LQ  ++ +V++M  SQ+Q     EQ       L+ I + +  I 
Sbjct: 497 MRTQSSTQEIANIIQTLQSRTRAIVQLMDASQKQGAESAEQAAAAGELLKLINNDVRNIM 556

Query: 596 EMADQVAHAAQEQIVVSQSVAHHVTGIAEVAHETEREARESASSSEVLADLAAKQQQLIA 655
           +M+ Q+A A +EQ +V+  V  +V  I ++A ++ R A  +AS+S+ L   A      ++
Sbjct: 557 DMSTQIAAAIEEQSMVAAEVNKNVVVIRDIAEDSSRAADANASASDELRTRAEYLVSAVS 616

Query: 656 HFKV 659
           HFK+
Sbjct: 617 HFKI 620