Pairwise Alignments

Query, 659 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 673 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  314 bits (805), Expect = 7e-90
 Identities = 217/679 (31%), Positives = 365/679 (53%), Gaps = 26/679 (3%)

Query: 1   MGLSIVQRIIAGFVLMLLLLILLGVISTLKIRGINDGLSEVSDRATPLVMAVAGLKEALQ 60
           M +++  R+I GF ++ LLL+LLG  S L    + D  + +   + P + +   L E+L 
Sbjct: 1   MKVNVATRVIGGFSVVTLLLVLLGFTSYLTNISLKDSSAMMQQLSLPALKSTNHLTESLS 60

Query: 61  ESNRWVLEFRTSEEAGELPQLSNKFKDQQARFRQLSQQMNALTDSTESQKQFQDVL-QAT 119
           E  R VL    + ++  +P +   F D  A+F+    ++N LT   + Q     ++ Q +
Sbjct: 61  EQQRQVLIAYHAPKSRLIPDIRKVFNDHSAQFKN---EINNLTLLVQKQNNLSSLISQLS 117

Query: 120 NQFYSQADQVLTQHSEWVNALAQRRKLEIAFIRLEDTYQWAADLLLQ-------QSSGQR 172
           N F +     L   SE   AL+++ +L     +LE+    A+ +LL        Q+   +
Sbjct: 118 NSFSTFERDSLAMLSEREAALSKQEQLISLKKKLENAADDASSVLLDIIDLENSQNPDAQ 177

Query: 173 SMRNKAELITSGIARDLKNIRRADAKTDLNELEKVLSKDIEM----ARKRLDRV------ 222
           S+   A  I +G+   +  I    +  ++++ E ++SK+++      + +L+ V      
Sbjct: 178 SIAASASAIDTGMGNIITTIADLVSNDEMSKHE-LISKELDYILSETKNKLEYVNRHAEG 236

Query: 223 LVPDDVKARYIANLNRLQELALGQNGLLATMRKAQQLENALLIQNQQ--VDASLASSLAK 280
           +V  D       ++ ++  L  G + ++   +KA QL +A    NQ   ++  +      
Sbjct: 237 IVDADTLESINQDVKKVLTLLEGSDSMV--QQKANQLNHAQAASNQLAIIEKDVKVIDRN 294

Query: 281 LDDMAKYAGSIAQQSRMLADAAVSSANFWIMAVSAISAAVALVIGYTTARSIQKPLQKIN 340
           +++++    ++A Q        + +A+F  M V  I+  VA++I +     +++ L ++N
Sbjct: 295 MEEVSDNIEAVAAQMSQATITQIDAASFRTMIVVLIAIVVAIIISFAVVTPLKRSLNQVN 354

Query: 341 HELAYMARGDMTRRINYPTRCEFGALSRSIDILADKTGELLSQINAGSRHLVNEASRSAE 400
           + L  +A G++T +++  ++ EF  L+++ + L D    L++ I   S  L   A +++ 
Sbjct: 355 NALNVLASGNLTHKLDDSSQDEFAELAKNCNRLVDSLRGLIAGILDRSNQLAAAAEQTSA 414

Query: 401 ISERAMARVQEQKSQTDQVAAAITELEVSATEVARSTDGAKDEVDRADAEAKQGRQKVAT 460
           I+ +    +QEQKSQ DQVA A TEL  SA +V+ S + A  ++ +AD EAK  R     
Sbjct: 415 ITAQTTTGIQEQKSQVDQVATATTELSSSAQQVSMSANDALAQIKQADQEAKHMRAIAEE 474

Query: 461 TRRITEQLASDMESAVGITHKLGEFSNNIGSILDVIRGIAEQTNLLALNAAIEAARAGDA 520
            +     LA ++  A  + +K+   S  IGSILDVIRGIAEQTNLLALNAAIEAARAG+ 
Sbjct: 475 NKHTILALAEEVAKAGQVINKVHSDSAAIGSILDVIRGIAEQTNLLALNAAIEAARAGEQ 534

Query: 521 GRGFAVVADEVRALATRTQTSTEEIQHMIENLQESSKQVVEVMGRSQEQTRACVEQTREM 580
           GRGFAVVADEVR+LA+RTQ ST EIQ MIE LQ+ ++Q V  M   + Q  ACV++T + 
Sbjct: 535 GRGFAVVADEVRSLASRTQVSTREIQQMIEVLQQGAQQAVAAMDMGRAQANACVQKTEQA 594

Query: 581 DSALQSIADRMGAIKEMADQVAHAAQEQIVVSQSVAHHVTGIAEVAHETEREARESASSS 640
           + AL++I+  +    +    +AHAAQEQ +VSQ V+  +  IA ++ ET   A ++A SS
Sbjct: 595 NLALETISQSVHKAYDAGTHIAHAAQEQNLVSQQVSEKLEHIAAISEETAIGADQTAQSS 654

Query: 641 EVLADLAAKQQQLIAHFKV 659
             +A LA + Q  +  F+V
Sbjct: 655 HQVAKLAEELQASVGEFRV 673