Pairwise Alignments

Query, 659 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  194 bits (493), Expect = 9e-54
 Identities = 118/383 (30%), Positives = 199/383 (51%), Gaps = 6/383 (1%)

Query: 279 AKLDDMAKYAGSIAQQSRMLADAAVSSANFWIMAVSAISAAVALVIGYTTARSIQKPLQK 338
           A +DD+     ++ +  R      ++  +  I+ ++ +       +    A  +  P++ 
Sbjct: 176 AYIDDIE----AVVEDYRQTVTEQMAEKSLMILLIALVLTGATAFVIMVAAHRMVVPIKN 231

Query: 339 INHELAYMARG--DMTRRINYPTRCEFGALSRSIDILADKTGELLSQINAGSRHLVNEAS 396
           +   L  +A+G  D+T+R++     E   L R+ ++  DK   ++  + + +  +   A+
Sbjct: 232 MADNLNDIAKGEGDLTKRLSVKGEDEIAQLGRAFNLFVDKLQHIIGDVASATAKVKTAAN 291

Query: 397 RSAEISERAMARVQEQKSQTDQVAAAITELEVSATEVARSTDGAKDEVDRADAEAKQGRQ 456
              + ++   +++    ++TDQV  AITE+  +A+EVA++T    +    A  +    ++
Sbjct: 292 AIHDQTKVMSSQLLSHNNETDQVVTAITEMSSTASEVAQNTTQVAEATQAATGDVANAQR 351

Query: 457 KVATTRRITEQLASDMESAVGITHKLGEFSNNIGSILDVIRGIAEQTNLLALNAAIEAAR 516
            V  +      L   +  A G    L E S  I S+L VI GIAEQTNLLALNAAIEAAR
Sbjct: 352 CVDASLEEIAALMEQINHAAGSIKSLSEQSQKINSVLSVIGGIAEQTNLLALNAAIEAAR 411

Query: 517 AGDAGRGFAVVADEVRALATRTQTSTEEIQHMIENLQESSKQVVEVMGRSQEQTRACVEQ 576
           AG+ GRGFAVVADEVR+LA+RTQ ST EI  M+  L +   Q V+ M  SQ+     VE 
Sbjct: 412 AGEQGRGFAVVADEVRSLASRTQASTLEINEMLSALHKLVSQAVKTMDESQQSCVRSVES 471

Query: 577 TREMDSALQSIADRMGAIKEMADQVAHAAQEQIVVSQSVAHHVTGIAEVAHETEREARES 636
           +R +  +L S+   + AI +M+ Q+A AA EQ  V++ +  +V  I E+ +E    +  +
Sbjct: 472 SRAISESLGSVTSAVTAINDMSTQIATAATEQSSVTEEINRNVYAIQEIVNELLHSSEHA 531

Query: 637 ASSSEVLADLAAKQQQLIAHFKV 659
           A  S+ ++        L+  FK+
Sbjct: 532 ARVSQTVSQEGTNLGNLVGQFKI 554