Pairwise Alignments

Query, 659 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 653 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  234 bits (596), Expect = 1e-65
 Identities = 180/667 (26%), Positives = 331/667 (49%), Gaps = 30/667 (4%)

Query: 3   LSIVQRIIAGFVLMLLLLILLGVISTLKIRGINDGLSEVSDRATPLVMAVAGLKEALQES 62
           L++ +++    V ++ +LI LGV+S   +  I++ +  V++   P     + L   LQE 
Sbjct: 7   LTLTKKLAIVPVFLVAMLITLGVLSYFALTDIDNRMRTVTEDLAPESDLTSSL---LQEI 63

Query: 63  NRWVLEFRTSEEAGELPQLSNKFKDQQARFRQLSQQMNALTDSTESQKQFQDVLQATNQF 122
            R  L  +T  + G   + + +F  Q ++ R +  +  A  D+ E  +  Q +++    +
Sbjct: 64  YRLRLTVKTYVKTGS-SETAAEFSAQDSKTRDILAKAKAHIDNQERSQMLQRIIEHEKDY 122

Query: 123 YSQADQVLTQHSEWVNALAQRRKLEIAFIRLEDTYQWAADLLLQQSSGQRSMRNKAELIT 182
               +Q +  + +      QR KL    + ++          +++   Q    +  +   
Sbjct: 123 VDIFNQQVVPNQQ------QRAKLVTGTLDVKGPE-------IEKIISQIMQYSFTDGDV 169

Query: 183 SGIARDLKNIRRADAKTDLNELEKVLSKDIEMARKRLDRVLVPDDVKARYIANLNRL--Q 240
            G     KN+R       L   + +L    + A++  D ++          A L+ L  Q
Sbjct: 170 QGAFYAGKNLREL-LLARLYVSKFLLDNQADQAQRFRDEIVNTHTTMDELAAALDNLTYQ 228

Query: 241 ELALGQNGLLATMRKAQQL-------ENALLIQNQQVDASLASSLAKL-DDMAKYAGSIA 292
                  GLL    +A           N  ++Q   +   +A   + L D+  K      
Sbjct: 229 SQVKQAAGLLTEYEQAANSVVTAINNRNQAIVQLDNIGIEMAQMTSDLQDNTMKSLSEAG 288

Query: 293 QQSRMLADAAVSSANFWIMAVSAISAAVALVIGYTTARSIQKPLQKINHELAYMARGDMT 352
            ++       ++  N  ++    +SA + +++  +  R+I++ +  +N E+A     D+T
Sbjct: 289 DKAAKEVSQKITFINIILLIAILLSAFITVIVTQSLLRTIREVVALLN-EIAD-GEADLT 346

Query: 353 RRINYPTRCEFGALSRSIDILADKTGELLSQINAGSRHLVNEASRSAEISERAMARVQEQ 412
           +R+      E   L+++ +    +  +L++++   +  +V+ +++   ++  A   +  Q
Sbjct: 347 QRLPVNGHDELTQLAKNFNRFVLRIQQLVAEVKDTTVQMVSASTQLNSVTHSATQDMSSQ 406

Query: 413 KSQTDQVAAAITELEVSATEVARSTDGAKDEVDRADAEAKQGRQKVATTRRITEQLASDM 472
           +++T  VA+AITE+  SA EVA S D A    + A A+A  GR+ V        +LAS +
Sbjct: 407 QNETQLVASAITEMAASAVEVAASADTANKLSEDAKAQALLGRETVTRATHSMRELASKV 466

Query: 473 ESAVGITHKLGEFSNNIGSILDVIRGIAEQTNLLALNAAIEAARAGDAGRGFAVVADEVR 532
           E++     +L   S+ IG++LDVIR IAEQTNLLALNAAIEAARAG+ GRGFAVVADEVR
Sbjct: 467 EASATTIEQLRNDSDKIGAVLDVIRAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR 526

Query: 533 ALATRTQTSTEEIQHMIENLQESSKQVVEVMGRSQEQTRACVEQTREMDSALQSIADRMG 592
           +LA+RTQ ST++IQ +I+ LQ+ S     +MG+S+E T + VEQ  +++SAL +I + + 
Sbjct: 527 SLASRTQESTKQIQQIIQTLQDRSGSAATMMGQSREATNSTVEQVTQVESALSTITEMVM 586

Query: 593 AIKEMADQVAHAAQEQIVVSQSVAHHVTGIAEVAHETEREARESASSSEVLADLAAKQQQ 652
           +I     Q+AHAA++Q  V + +   +  + + A+ T    +++ASS+  L  +  +   
Sbjct: 587 SITHSVSQMAHAAEQQSTVVEEINMSINSVNDSANRTLTGVKQAASSANGLLGIGQQLDG 646

Query: 653 LIAHFKV 659
           L++ FKV
Sbjct: 647 LVSEFKV 653