Pairwise Alignments

Query, 659 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 634 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  221 bits (564), Expect = 6e-62
 Identities = 131/366 (35%), Positives = 199/366 (54%), Gaps = 2/366 (0%)

Query: 296 RMLADAAVSSANFWIMAVSAISAAVALVIGYTTARSIQKPLQKINHELAYMARG--DMTR 353
           R  ++ A+S     ++ +  I+  +   I +  A+SI +P+ +    L  +A G  D+TR
Sbjct: 269 RSHSEQAMSDIRLKLIMIGVIALLIGTAIAWFIAKSITRPIAETTDALNDIAEGEGDLTR 328

Query: 354 RINYPTRCEFGALSRSIDILADKTGELLSQINAGSRHLVNEASRSAEISERAMARVQEQK 413
           RI   ++ E   L+++ +  A+K    ++Q++  +  L   A   + I+         Q 
Sbjct: 329 RIEVKSKDEMAQLAQAFNRFAEKIHATVAQVSDSTSLLATSAEEMSAITHETQQMANRQH 388

Query: 414 SQTDQVAAAITELEVSATEVARSTDGAKDEVDRADAEAKQGRQKVATTRRITEQLASDME 473
            +T+QVA A+ E+  +  EVA +   A D    A    +QG+  V         LA ++ 
Sbjct: 389 LETEQVATAMNEMAATVQEVAHNATDAADAATHASESTEQGKLLVEKVISTISLLADEIA 448

Query: 474 SAVGITHKLGEFSNNIGSILDVIRGIAEQTNLLALNAAIEAARAGDAGRGFAVVADEVRA 533
            A    ++L   +  I S+L VIR IA+QTNLLALNAAIEAARAG+ GRGFAVVADEVR 
Sbjct: 449 QAANAINELERNTTQIDSVLVVIRNIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRT 508

Query: 534 LATRTQTSTEEIQHMIENLQESSKQVVEVMGRSQEQTRACVEQTREMDSALQSIADRMGA 593
           LA+RTQ ST EIQ MIE LQ+S+K  V  M  S   T++CV    E  SAL++I   +  
Sbjct: 509 LASRTQASTTEIQQMIETLQQSAKATVSSMNTSTATTQSCVSLVHEAGSALEAITQAVST 568

Query: 594 IKEMADQVAHAAQEQIVVSQSVAHHVTGIAEVAHETEREARESASSSEVLADLAAKQQQL 653
           I +M  Q+A AA EQ  VS  +  +V  I ++A      A ++A + + LA L+ +   L
Sbjct: 569 ISQMNIQIASAANEQCAVSAEINKNVNNINDIATNATESAMQTARAGDELAQLSMRLTTL 628

Query: 654 IAHFKV 659
           ++ FK+
Sbjct: 629 LSQFKI 634



 Score = 38.9 bits (89), Expect = 7e-07
 Identities = 69/339 (20%), Positives = 130/339 (38%), Gaps = 56/339 (16%)

Query: 195 ADAKTDLNELEKVLSKDIEMARKRLDRVLVPDDVKARYIANLNRLQELALGQNGLLATMR 254
           A+ + DL    +V SKD EMA+         + + A      +    LA     + A   
Sbjct: 320 AEGEGDLTRRIEVKSKD-EMAQLAQAFNRFAEKIHATVAQVSDSTSLLATSAEEMSAITH 378

Query: 255 KAQQLENALLIQNQQVDASLASSLAKLD----------DMAKYAGSIAQQSRMLADAAVS 304
           + QQ+ N   ++ +QV  ++    A +           D A +A    +Q ++L +  +S
Sbjct: 379 ETQQMANRQHLETEQVATAMNEMAATVQEVAHNATDAADAATHASESTEQGKLLVEKVIS 438

Query: 305 SANFWIMAVSAISAAVALVIGYTTARSIQKPLQKINHELAYMAR-GDMTRRINYPTRCE- 362
           + +  ++A     AA A+         +++   +I+  L  +    D T  +      E 
Sbjct: 439 TIS--LLADEIAQAANAI-------NELERNTTQIDSVLVVIRNIADQTNLLALNAAIEA 489

Query: 363 --FGALSRSIDILADKTGELLSQINAGSRHLVNEASRSAEISERAMARVQEQKSQTDQVA 420
              G   R   ++AD+   L S+  A +  +                   +Q  +T Q +
Sbjct: 490 ARAGEQGRGFAVVADEVRTLASRTQASTTEI-------------------QQMIETLQQS 530

Query: 421 AAITELEVSATEVARSTDGAKDEVDRADAEAKQGRQKVATTRRITEQLASDMESAVGITH 480
           A  T   ++ +    +T      V  A +  +   Q V+T  ++  Q+AS       ++ 
Sbjct: 531 AKATVSSMNTS--TATTQSCVSLVHEAGSALEAITQAVSTISQMNIQIASAANEQCAVSA 588

Query: 481 KLGEFSNNIGSILDVIRGIAEQTNLLALNAAIEAARAGD 519
           ++ +  NNI  I          TN  A  +A++ ARAGD
Sbjct: 589 EINKNVNNINDI---------ATN--ATESAMQTARAGD 616