Pairwise Alignments

Query, 659 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 673 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  309 bits (792), Expect = 2e-88
 Identities = 223/680 (32%), Positives = 353/680 (51%), Gaps = 28/680 (4%)

Query: 1   MGLSIVQRIIAGFVLMLLLLILLGVISTLKIRGINDGLSEVSDRATPLVMAVAGLKEALQ 60
           M +++  R+I GF ++ LLL+LLG  S L    + D  + + + + P + A   L E L 
Sbjct: 1   MKVNVATRVIGGFSVVTLLLVLLGFTSYLTNISLKDSSAMMQELSLPALKATNHLTETLS 60

Query: 61  ESNRWVLEFRTSEEAGELPQLSNKFKDQQARFRQLSQQMNALTDSTESQKQFQDVLQATN 120
           E  R VL    + ++  +P +   F D   +F+    +++ LT   + Q     ++   +
Sbjct: 61  EQQRQVLIAYHAPKSSNIPDIRKVFNDHGTQFKN---EISNLTQLVQGQANLSALISQLD 117

Query: 121 QFYSQADQ-VLTQHSEWVNALAQRRKLEIAFIRLEDTYQWAADLLLQQSSGQRSMRNKAE 179
             +S  ++  L   +E   AL+++ +L     +LE+    A+ +LL     + S    A+
Sbjct: 118 GSFSTFERDSLAMLTEREAALSKQEQLIGLKKKLENAADDASSVLLDIIDLENSQNPDAQ 177

Query: 180 LIT---SGIARDLKNIRRADAKTDLNELEKVLSKDIEMARKRLDRVLVPDDVKARYI--- 233
            I    S I   + NI    A    NE    +SK  E+  K LD +L     K  Y+   
Sbjct: 178 SIAASASAIDTSMGNIITTIADLVTNE---EMSKH-ELISKELDYILSETKNKLEYVNRH 233

Query: 234 ------------ANLNRLQELALGQNGLLATMRKAQQLENALLIQNQ--QVDASLASSLA 279
                        N +  + LAL +      + KA QL +A    NQ   ++  +     
Sbjct: 234 AQDIIDADTLKSVNEDTKKVLALLEGPDSMVLLKATQLNHAKSAMNQLATIEKDVKVIDR 293

Query: 280 KLDDMAKYAGSIAQQSRMLADAAVSSANFWIMAVSAISAAVALVIGYTTARSIQKPLQKI 339
            ++D++    S+A        A + +A+   + V  I+   A++I +     +++ L ++
Sbjct: 294 NMEDVSNNIESVAANMSQETIAKIDAASIRTIIVVLIAIVAAVIISFAVVAPLKRSLYQV 353

Query: 340 NHELAYMARGDMTRRINYPTRCEFGALSRSIDILADKTGELLSQINAGSRHLVNEASRSA 399
           N+ L  +A G++T +++     EF  L+++ + L D    L+  I   S  L   A +++
Sbjct: 354 NNALNVLASGNLTHKLDDSGHDEFAELAKNCNRLVDSLRGLIVGILDRSNQLAAAAEQTS 413

Query: 400 EISERAMARVQEQKSQTDQVAAAITELEVSATEVARSTDGAKDEVDRADAEAKQGRQKVA 459
            I+ +  + +QEQKSQ DQVA A TEL  SA +V+ S D A  ++ +AD EAK  R    
Sbjct: 414 AITAQTTSGIQEQKSQVDQVATATTELSSSAQQVSMSADDALAQIKQADQEAKHMRTIAE 473

Query: 460 TTRRITEQLASDMESAVGITHKLGEFSNNIGSILDVIRGIAEQTNLLALNAAIEAARAGD 519
             +R    LA ++  A  + +K+   S +IGSILDVIRGIAEQTNLLALNAAIEAARAG+
Sbjct: 474 ENKRTILALADEVAKAGQVINKVQSDSASIGSILDVIRGIAEQTNLLALNAAIEAARAGE 533

Query: 520 AGRGFAVVADEVRALATRTQTSTEEIQHMIENLQESSKQVVEVMGRSQEQTRACVEQTRE 579
            GRGFAVVADEVR+LA+RTQ ST EIQ MIE LQ+ ++Q V  M   + Q  ACV++T +
Sbjct: 534 QGRGFAVVADEVRSLASRTQVSTREIQQMIEVLQQGAQQAVAAMDMGRAQANACVDKTEQ 593

Query: 580 MDSALQSIADRMGAIKEMADQVAHAAQEQIVVSQSVAHHVTGIAEVAHETEREARESASS 639
            + AL++I+  +    +    +AHAAQEQ VVSQ V+  +  IA ++ ET   A ++A S
Sbjct: 594 ANLALETISQSVHKAYDAGTHIAHAAQEQNVVSQQVSEKLEHIAAISEETAIGADQTAQS 653

Query: 640 SEVLADLAAKQQQLIAHFKV 659
           S  +A LA + Q  +  F+V
Sbjct: 654 SHQVAKLAEELQASVGEFRV 673