Pairwise Alignments

Query, 659 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 505 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  199 bits (505), Expect = 3e-55
 Identities = 129/415 (31%), Positives = 208/415 (50%), Gaps = 1/415 (0%)

Query: 246 QNGLLATMRKAQQLENALLIQNQQVDASLASSLAKLDDMAKYAGSIAQQSRMLADAAVSS 305
           QN  + T+ +A      L      +D S +   A     A+   +I        DA ++ 
Sbjct: 91  QNVRIVTVSEADSRAQTLARSGGGIDTSSSPQRAISSVNAQNLVTIIPVDDRAIDALLAD 150

Query: 306 ANFWIMAVSAISAAVALVIGYTTARSIQKPLQKINHELAYMARGDMTRRINY-PTRCEFG 364
            N  +  V A+   V  +  Y  +  +   L      L   A GD+T R+N+   + EF 
Sbjct: 151 DNILVYGVMAVLLFVLFLFSYYISTFVGGALYTTVMALKRAASGDLTGRLNFFEVKDEFS 210

Query: 365 ALSRSIDILADKTGELLSQINAGSRHLVNEASRSAEISERAMARVQEQKSQTDQVAAAIT 424
            L+ SID L ++   L+ QI   +  +    S     +++  A    Q+   D +A A+ 
Sbjct: 211 ILAISIDTLVERQHTLVKQIAESTSKIREVVSSFRSTAQQGQALAVNQRQHLDSLATAME 270

Query: 425 ELEVSATEVARSTDGAKDEVDRADAEAKQGRQKVATTRRITEQLASDMESAVGITHKLGE 484
           E+  +  EVAR+ + +  E   A+ +   G + + TT    + L+ ++ +A    + L E
Sbjct: 271 EMTAAVKEVARNAEQSSAETQEANQQVNAGSKDIETTVSAIDVLSDEISAASDAVNILNE 330

Query: 485 FSNNIGSILDVIRGIAEQTNLLALNAAIEAARAGDAGRGFAVVADEVRALATRTQTSTEE 544
            ++ I  ++  I  I++QTNLLALNAAIEAARAG+ GRGFAVVADEVR LA RTQ +T E
Sbjct: 331 NASKIDEVVSTINAISQQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAGRTQAATVE 390

Query: 545 IQHMIENLQESSKQVVEVMGRSQEQTRACVEQTREMDSALQSIADRMGAIKEMADQVAHA 604
           I+ MIE+LQ+ S+ + +VM R+  Q     +   +    L+SIA     + EM+  +A +
Sbjct: 391 IKSMIESLQQGSRNLTQVMSRTVSQASEGKQHVLQTGKDLESIAHHSSRVFEMSVLIATS 450

Query: 605 AQEQIVVSQSVAHHVTGIAEVAHETEREARESASSSEVLADLAAKQQQLIAHFKV 659
           A+EQ  V+  +A ++  I   +H+ E+ A +S S  + L   A +  QL+   KV
Sbjct: 451 AEEQSAVANEIATNLMEIRNQSHDVEQSANQSVSGCDELQATAGQLDQLMVGLKV 505



 Score = 27.7 bits (60), Expect = 0.001
 Identities = 47/243 (19%), Positives = 99/243 (40%), Gaps = 37/243 (15%)

Query: 73  EEAGELPQLSNKFKDQQARFRQLSQQMNALTDSTESQKQFQDVLQATNQFYSQADQVLTQ 132
           E    + +++   +   A  ++ +QQ+NA +   E+     DVL       S A  +L +
Sbjct: 271 EMTAAVKEVARNAEQSSAETQEANQQVNAGSKDIETTVSAIDVLSDEISAASDAVNILNE 330

Query: 133 HS-------EWVNALAQRRKLEIAFIRLEDTYQWAADLLLQQSSG-------QRSMRNKA 178
           ++         +NA++Q+  L      +E      A    +Q  G        R++  + 
Sbjct: 331 NASKIDEVVSTINAISQQTNLLALNAAIE------AARAGEQGRGFAVVADEVRTLAGRT 384

Query: 179 ELITSGIARDLKNIRRADAKTDLNELEKVLSKDIEMARKRLDRVLVPDDVKARYIANLNR 238
           +  T  I   ++++++         L +V+S+ +  A +    VL           + +R
Sbjct: 385 QAATVEIKSMIESLQQGS-----RNLTQVMSRTVSQASEGKQHVLQTGKDLESIAHHSSR 439

Query: 239 LQELALGQNGLLATMRKAQQ------LENALLIQNQ--QVDASLASSLAKLDDMAKYAGS 290
           + E+++    L+AT  + Q         N + I+NQ   V+ S   S++  D++   AG 
Sbjct: 440 VFEMSV----LIATSAEEQSAVANEIATNLMEIRNQSHDVEQSANQSVSGCDELQATAGQ 495

Query: 291 IAQ 293
           + Q
Sbjct: 496 LDQ 498