Pairwise Alignments

Query, 659 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 620 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  221 bits (564), Expect = 6e-62
 Identities = 154/424 (36%), Positives = 240/424 (56%), Gaps = 14/424 (3%)

Query: 246 QNGLLATMRKAQQLENALLIQNQQVDASLAS-SLAKLDDMAKYAGSIAQQSRMLA----- 299
           QN + A + + Q+   +L+ + QQ+  S    ++AKL    K   + A +   LA     
Sbjct: 201 QNKIAALIEQYQKDFKSLVNKEQQLGLSEKDGTMAKLIAANKLTEASADELHNLALKAID 260

Query: 300 DAAVSSANFWIMAVSAISAAVALVIGYTTARSIQKPLQKINHELAYM-ARGDMTRRINYP 358
           D   SS N  I+ V  I A +  VI Y   RSI  P+++I   ++ +    D+T R +  
Sbjct: 261 DTESSSVNIGIL-VFVIIALILAVITYLIIRSIITPVERITQVISRIEVSKDLTLRCDAS 319

Query: 359 TRCEFGALSRSIDILADKTGELLSQINAGSRHLVNEASRSAEISERAMAR---VQEQKSQ 415
           T+ E G +++  + +     +L+ Q+   S   +N + +S  +SE AM     V +Q ++
Sbjct: 320 TQDELGEIAQHFNSMVGSFQQLIEQV-IDSVATINTSCKS--VSENAMLASEGVAQQLNE 376

Query: 416 TDQVAAAITELEVSATEVARSTDGAKDEVDRADAEAKQGRQKVATTRRITEQLASDMESA 475
           TD VA AITE+  +  E+A++T+ A  +  +    A+ G+ +V  T     QL+  + S+
Sbjct: 377 TDMVATAITEMGATIDEIAKTTELAALKAGKTHDNAQLGQTEVEQTILKIRQLSEQINSS 436

Query: 476 VGITHKLGEFSNNIGSILDVIRGIAEQTNLLALNAAIEAARAGDAGRGFAVVADEVRALA 535
             +  +L   S  IGS+LDVIRGIAEQTNLLALNAAIEAARAG+ GRGFAVVADEVR+LA
Sbjct: 437 ASVVDELERDSETIGSVLDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLA 496

Query: 536 TRTQTSTEEIQHMIENLQESSKQVVEVMGRSQEQTRACVEQTREMDSALQSIADRMGAIK 595
            RTQTST+EI ++I+ LQ  ++ +V++M  SQ+Q     EQ       L+ I   +  I 
Sbjct: 497 MRTQTSTQEIANIIQTLQSRTRAIVQLMDASQKQGAESAEQAAAAGELLKLINTDVHNIM 556

Query: 596 EMADQVAHAAQEQIVVSQSVAHHVTGIAEVAHETEREARESASSSEVLADLAAKQQQLIA 655
           +M+ Q+A A +EQ +V+  V  +V  I ++A ++ R A  +AS+S+ L   A      ++
Sbjct: 557 DMSTQIAAAIEEQSMVAAEVNKNVVVIRDIAEDSSRAADANASASDELKSRAEYLVSAVS 616

Query: 656 HFKV 659
           HFK+
Sbjct: 617 HFKI 620