Pairwise Alignments

Query, 458 a.a., carbohydrate ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 419 a.a., N-Acetyl-D-glucosamine ABC transport system, periplasmic substrate-binding component (from data) from Sinorhizobium meliloti 1021

 Score =  451 bits (1159), Expect = e-131
 Identities = 218/410 (53%), Positives = 281/410 (68%), Gaps = 11/410 (2%)

Query: 10  GLLLSGQLMASE---------LVIESWRADDKALWEQKIIPAFEAANPGIKVKFNPVPNV 60
           GLLL+  ++ S          L IESWR DD A+W++K+IPAFEA NPGIKV F P    
Sbjct: 8   GLLLASSILGSAGLAQAQDATLTIESWRNDDLAIWQEKLIPAFEAKNPGIKVVFAPSAPT 67

Query: 61  NYTPTLWENLKAGKAGDLITCRPFDDSLALFKAGHLAEITEMAGMENFPSFAQAPWQTDS 120
            Y   L   L AG AGDLITCRPFD SL L+   HLA++T ++GMENF   A++ W TD 
Sbjct: 68  EYNAALNAKLDAGSAGDLITCRPFDASLELYNKKHLADLTGLSGMENFSDVAKSAWTTDD 127

Query: 121 GAQTFCVPMASVIHGFFYNKKIFNELGLSVPQTREQFFTVLDKVKADGRYIPLSMSGSES 180
           G  TFCVPMASVIHGF YNK  F++LGLSVP T E+FF VL+K+KADG YIP++M   + 
Sbjct: 128 GKATFCVPMASVIHGFIYNKDAFDQLGLSVPATEEEFFAVLEKIKADGNYIPMAMGTKDL 187

Query: 181 WVASELGYQNIGPNYWKGEDGRLALINGQEHLDDSQYVKVFEELARWRAYLGEDGELRDY 240
           W A+ +GYQNIGPNYWKGE+GRLAL+ G++ L D  +V+ F  LA+W+ YLG+  E + Y
Sbjct: 188 WEAATMGYQNIGPNYWKGEEGRLALLKGEQKLTDEPWVEPFRVLAKWKDYLGDGFEAQTY 247

Query: 241 GTSNELFTSGKAALYVAGSWEIAPFTDKVDF--GVMRPPVAKQGDGCFFTDHTDIGMGMN 298
             S  LFT G+AA+Y AGSWEI+ F  + +F  G   PPV K GD C+ +DH DIG+G+N
Sbjct: 248 PDSQNLFTLGRAAIYPAGSWEISGFNTQAEFKMGAFPPPVKKAGDTCYISDHNDIGIGLN 307

Query: 299 PASKNPQAAMAFLQWLTTPEFAELYTNSLPGFFSLSNHFFDVTNPAAREMMEWRDQCDST 358
             SKN  AA  FL W+ +PEFAE+Y N+LPGFFSL++    +++P A+E + WR++C  T
Sbjct: 308 AKSKNADAAKTFLTWVASPEFAEIYANALPGFFSLNSTAVKMSDPLAQEFVSWREKCKPT 367

Query: 359 IRVATQILSRGQPKLGDELAEVSQAVLVGKMTPTAAAERLEQGLKRWYAP 408
           IR   QILSRG P L +E   +S  V+ G  TP AAA++L+ GL  W+ P
Sbjct: 368 IRSTYQILSRGTPNLENETWVMSANVINGTDTPEAAAKKLQDGLDSWFKP 417