Pairwise Alignments

Query, 458 a.a., carbohydrate ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 409 a.a., putative sugar-binding periplasmic protein from Phaeobacter inhibens DSM 17395

 Score = 55.8 bits (133), Expect = 2e-12
 Identities = 56/219 (25%), Positives = 95/219 (43%), Gaps = 32/219 (14%)

Query: 90  LFKAGHLAEITEMAGMENFPSFAQAPWQTDS---GAQTFCVPMASVIHG---FFYNKKIF 143
           L +AG + ++TE+A  E +      P   DS     + +CVP+   IH     + + + F
Sbjct: 94  LIEAGLMTDLTELAEQEGWRDIVNPPSLLDSCTYEGRIYCVPVN--IHSTQWLWLSHEAF 151

Query: 144 NELGLSVPQTREQFFTVLDKVKADGRYIPLSMSGSESWVAS-ELGYQNIG---PNYWKGE 199
           ++ G+SVPQ   +F     K+ A+   +PL+M G + W      G   +G    + W+  
Sbjct: 152 DKAGMSVPQDWYEFVAAAPKL-AEAGIVPLAM-GQQGWQQRIAFGALTVGLVDQDSWR-- 207

Query: 200 DGRLALINGQEHLDDSQYVKVFEELARWRAYLGEDGELRDYGTSNELFTSGKAALYVAGS 259
             +++L          QY KVF+ +   R  L  +  ++D+  +  +  +GKA   + G 
Sbjct: 208 --KVSLERDAGVAAGPQYAKVFDAVVDARE-LARNSNVQDWNLATNMVITGKAGGQIMGD 264

Query: 260 WEIAPFTDKVDFGVMRPPVAKQGDGCFFTDHTDIGMGMN 298
           W    FT       +   VA Q   C        GMG+N
Sbjct: 265 WAQGEFT-------LAEQVAGQDYSCL------PGMGLN 290