Pairwise Alignments

Query, 458 a.a., carbohydrate ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 417 a.a., N-Acetyl-D-glucosamine ABC transport system, periplasmic substrate-binding component (from data) from Phaeobacter inhibens DSM 17395

 Score =  442 bits (1138), Expect = e-129
 Identities = 211/410 (51%), Positives = 277/410 (67%), Gaps = 5/410 (1%)

Query: 6   IGALGLLLSGQLMASE---LVIESWRADDKALWEQKIIPAFEAANPGIKVKFNPVPNVNY 62
           +  LG  + G   A+E   L IESWR DD ALW+ KIIPAFEAANPGIK+KF P     Y
Sbjct: 8   LALLGSTMIGGAAAAEDVTLTIESWRNDDLALWQDKIIPAFEAANPGIKLKFTPSAPAEY 67

Query: 63  TPTLWENLKAGKAGDLITCRPFDDSLALFKAGHLAEITEMAGMENFPSFAQAPWQTDSGA 122
              L   L AG AGDLITCRPFD SL L+  G LA+++++  M +F + A++ WQTD G+
Sbjct: 68  NAVLNSKLDAGSAGDLITCRPFDASLGLYDKGQLADLSDLDAMGSFSNVAKSAWQTDDGS 127

Query: 123 QTFCVPMASVIHGFFYNKKIFNELGLSVPQTREQFFTVLDKVKADGRYIPLSMSGSESWV 182
            TFCVP+ASVIHGF YNK  F ELG++VP+T ++FF  L+K+K DG Y+PL+M  ++ W 
Sbjct: 128 ATFCVPIASVIHGFIYNKDAFAELGVNVPETEDEFFAALEKIKEDGNYVPLAMGTNDQWE 187

Query: 183 ASELGYQNIGPNYWKGEDGRLALINGQEHLDDSQYVKVFEELARWRAYLGEDGELRDYGT 242
           A+ +GY NIGPNYWKGE+GRLALI G++ L D Q+V  +E L++W AY+G+  E + Y  
Sbjct: 188 AATMGYNNIGPNYWKGEEGRLALIAGEQKLTDDQWVAPYETLSKWGAYMGDGYEAQTYPD 247

Query: 243 SNELFTSGKAALYVAGSWEIAPFTDKVDF--GVMRPPVAKQGDGCFFTDHTDIGMGMNPA 300
           S  +FT G+AA+Y AGSWEI+ F  + DF  G  +PPV   GD C+ +DHTDI +G+N A
Sbjct: 248 SQNIFTLGRAAIYPAGSWEISGFNTQADFAMGAFKPPVKAAGDTCYISDHTDIAVGLNAA 307

Query: 301 SKNPQAAMAFLQWLTTPEFAELYTNSLPGFFSLSNHFFDVTNPAAREMMEWRDQCDSTIR 360
           S N +AA  FL W+ + EFA +Y N+LPGFFSLSNH   + +P A+E + WR +C+STIR
Sbjct: 308 SPNAEAAKTFLNWVGSAEFASIYANALPGFFSLSNHEVAMEDPLAQEFVSWRGECESTIR 367

Query: 361 VATQILSRGQPKLGDELAEVSQAVLVGKMTPTAAAERLEQGLKRWYAPHQ 410
              QILSRG P L +E    S A + G   P      L++GL  WY P +
Sbjct: 368 STYQILSRGTPNLENETWGASVAAIKGTKAPADLGAELQEGLASWYEPQK 417