Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 560 a.a., Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) from Pseudomonas fluorescens FW300-N2E2

 Score =  242 bits (617), Expect = 3e-68
 Identities = 179/555 (32%), Positives = 282/555 (50%), Gaps = 21/555 (3%)

Query: 1   MAFFKNLAIGKKIAVAFGVIALINLAFGGYLYNSLHTIKSDVLNLTDDTLPSMMLVNGIK 60
           M +  +  +  K+  +F + ALI LA G    + +  + + +  + ++ L S+   +  K
Sbjct: 15  MNWLNDAKLSTKLITSFFLCALITLAVGLLGVSGVSALSTRLQGVFNNNLVSVANTSQTK 74

Query: 61  YNMSSVRRAQISLLSST--DEAEIAEDIRWMNDHYQQIAQD--LSRYERSIWTDHERSIF 116
                  R    L  +T  +  +  +D    +    Q+A +   + Y +    + ER   
Sbjct: 75  TKAVGQTRDMYRLYVATAGNAPQSMKDEFLASMKANQLASEKAFADYRKGNLAEDERIAG 134

Query: 117 MPVKNLWNEYLRQLGSFNNDILQKEMIKAQQDLQRSLPTF-EKLETAIDELLKLNLSYVD 175
             +   W  Y          + Q   + A  DL+         L+ A  +++      +D
Sbjct: 135 DQMARDWPVYQAM-------VQQYLAMMAAGDLENGRTLLLGDLQKAYRKVMDQLTIMID 187

Query: 176 NNRSELTELIDNISEFSVASIVAL-----LAFMSAVT--WLLTNLICSPLMQVVTQANAI 228
           +N  +++E     ++  V +   L     +AF++A+     ++ LI  P+   V  A  I
Sbjct: 188 SNDRQISEDAKAATQQEVTAKTVLYSGIVVAFIAALLLGMFISRLISRPIAVAVDCAQRI 247

Query: 229 AEGNLAHRLDRKTIGHDELGELADACSKMQNNLRLMVEEIITSATQLAHAVDEVSAVSEQ 288
           A+G+L   +   +   DE G+L  A   MQ +L+  +++I +++ QLA A +E++AV++ 
Sbjct: 248 AQGDLTQHITSNS--RDEAGQLLKALGDMQTSLKTTIQQIASASDQLASAAEELTAVTDD 305

Query: 289 TSQGMQIQQEEVMQIATAMAEMKSTVAEVARNTEVASDASRDSSQHANVGSQQMRAVNDS 348
            S+ +  Q +E+ Q ATA+ EM S V EVARN    S AS+ +S  A+ G  Q R+   +
Sbjct: 306 GSRALIRQNDEIQQAATAVTEMTSAVEEVARNAVSTSQASQSTSSQASEGRDQARSAVQA 365

Query: 349 IQHVNQEIGRTEQRVLELESQAQQINMVVDVISNIAEQTNLLALNAAIEAARAGEQGRGF 408
           I    QEI  +   V +L  Q + I  V+DVI  IAEQTNLLALNAAIEAARAGEQGRGF
Sbjct: 366 INTATQEITSSTGLVKDLAVQVRDIGKVLDVIRGIAEQTNLLALNAAIEAARAGEQGRGF 425

Query: 409 AVVADEVRSLAGKTQQSTGDIVEIIQNLQACAQKARETTNNSRELINHCVEQSQETQQAI 468
           AVVADEVR+LA +TQ STG+I  +I  +Q  A  A +    S+ L+    + ++ T +A+
Sbjct: 426 AVVADEVRALAARTQASTGEIESMIHAVQDRADSAVDAMGKSQALVTETQDLARATGEAL 485

Query: 469 EQIRHQSSQIADMTIQIASACGEQDSVSEELSRNIERINESAKQVAQGSSSAAQSCAELS 528
           EQI    SQI D  + IA+A  EQ  V+ E+ RN+  I + + Q A G++    S  ELS
Sbjct: 486 EQIADNISQINDRNLVIATASEEQAHVAREVDRNLVNIQDLSTQTAAGANQTNASSQELS 545

Query: 529 QLASQLQDTVQRFRL 543
            LA      V RFRL
Sbjct: 546 NLALSFNSLVGRFRL 560