Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 640 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  238 bits (608), Expect = 4e-67
 Identities = 147/348 (42%), Positives = 203/348 (58%), Gaps = 4/348 (1%)

Query: 196 IVALLAFMSAVTWLLTNLICSPLMQVVTQANAIAEGNLAHRLDRKTIGHDELGELADACS 255
           +V LL  ++AV  ++T  I  PL   +     IA G+L H         DELG L     
Sbjct: 297 LVMLLGILAAV--IITRQITRPLRDTLAIVERIASGDLTHT--EAVTRRDELGVLQQGIQ 352

Query: 256 KMQNNLRLMVEEIITSATQLAHAVDEVSAVSEQTSQGMQIQQEEVMQIATAMAEMKSTVA 315
           +M   LR ++  I    TQ+A A +E+SAV+EQTS G+  Q+ E  Q+ATAM EM +TV 
Sbjct: 353 RMGTTLRELISGIRDGVTQIASAAEELSAVTEQTSAGVNSQKVETDQVATAMHEMSATVH 412

Query: 316 EVARNTEVASDASRDSSQHANVGSQQMRAVNDSIQHVNQEIGRTEQRVLELESQAQQINM 375
           EVARN E AS A+ D+ Q A  G + +      I+ +  E+ R+   +  LE  + +I  
Sbjct: 413 EVARNAEQASVAASDADQQARDGDKVVGEAIQQIERLAAEVVRSSDAMNVLEQDSDKIGK 472

Query: 376 VVDVISNIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAGKTQQSTGDIVEIIQN 435
           V+DVI  +AEQTNLLALNAAIEAARAGE GRGFAVVADEVR LA +TQQST +I  ++  
Sbjct: 473 VMDVIKAVAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRGLAQRTQQSTEEIEGLVAA 532

Query: 436 LQACAQKARETTNNSRELINHCVEQSQETQQAIEQIRHQSSQIADMTIQIASACGEQDSV 495
           LQ   ++       SR L +  VE ++    ++E I    S I  M  QIA+A  +Q SV
Sbjct: 533 LQNGTRQVSGIMLGSRTLTDSSVELTRRAGTSLESITRTVSSIQAMNQQIAAAAEQQSSV 592

Query: 496 SEELSRNIERINESAKQVAQGSSSAAQSCAELSQLASQLQDTVQRFRL 543
           ++E+SR+I  + + ++Q A+ S   A S  EL++L  QLQ  V  FR+
Sbjct: 593 ADEISRSIVNVRDVSEQTAEASEETAASSVELARLGGQLQMMVSHFRV 640



 Score = 35.8 bits (81), Expect = 5e-06
 Identities = 71/369 (19%), Positives = 135/369 (36%), Gaps = 49/369 (13%)

Query: 210 LTNLICSPLMQVVTQANAIAEGNLAHRLD-------------RKTIGHDELGELADACSK 256
           LTNL  + L  ++T  +  A  N+  +LD                +    L ELAD    
Sbjct: 56  LTNLRVARLQYMLTDGDETAAQNMQSKLDVFKAQQQSLLVSFNNPVNLKPLRELADVTRD 115

Query: 257 MQNNLRLMVEEIITSATQLAHAVDEVSAVSEQTSQGMQIQQEEVMQIATA------MAEM 310
            + +L  M    +  A   A   +E++A      Q ++     V+QI  A      +A++
Sbjct: 116 YEASLNSM--RAVYQAG--AKVRNEMTANGTAAMQAVESLNNAVLQIDPADPARFDLAQL 171

Query: 311 KSTVAE--VARNTEVASDASRDSSQHANVGSQQMRAVNDSIQHVNQEIG-RTEQRVLELE 367
            ++  +  V    EV       + +      QQ+ +    +       G    +++ + E
Sbjct: 172 ANSARQDLVLVRYEVRGYTGNPNDKTETAAFQQLDSAISHLDRFKAAFGPANREQIAQFE 231

Query: 368 SQAQQINMVVDVISNIAEQTNLLALNAAIEAA---RAGEQGRGFAVVADEVRSLAGKTQQ 424
           S  +     VDV     +    +  +   + A   + GE+  G  +   +  +   ++ Q
Sbjct: 232 SALRNYRSSVDVFKATTQTAASVRKDLTTQGATIVKLGEELYGLQMQMGKEDTAHARSLQ 291

Query: 425 STGDIVEIIQNLQACAQKARETTNNSRELI-------------NHCVEQSQE---TQQAI 468
               ++ ++  + A     R+ T   R+ +                V +  E    QQ I
Sbjct: 292 IGCVVLVMLLGILAAVIITRQITRPLRDTLAIVERIASGDLTHTEAVTRRDELGVLQQGI 351

Query: 469 EQ----IRHQSSQIADMTIQIASACGEQDSVSEELSRNIERINESAKQVAQGSSSAAQSC 524
           ++    +R   S I D   QIASA  E  +V+E+ S  +        QVA      + + 
Sbjct: 352 QRMGTTLRELISGIRDGVTQIASAAEELSAVTEQTSAGVNSQKVETDQVATAMHEMSATV 411

Query: 525 AELSQLASQ 533
            E+++ A Q
Sbjct: 412 HEVARNAEQ 420