Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 542 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  224 bits (571), Expect = 6e-63
 Identities = 158/542 (29%), Positives = 262/542 (48%), Gaps = 6/542 (1%)

Query: 5   KNLAIGKKIAVAFGVIALINLAFGGYLYNSLHTIKSDVLNLTDDTLPSMMLVNGIKYNMS 64
           + L I  + +  F ++ ++    G +    LH I+   L + +D LP + L + I   + 
Sbjct: 3   RQLKIAARTSACFALMVVLVFGLGIFSIQQLHGIREQSLEIENDALPGIALGDDIALAVE 62

Query: 65  SVRRAQISLLSSTDEAEIAEDIRWMNDHYQQIAQDLSRYERSIWTDHERSIFMPVKNLWN 124
             R     +L++ D A++        D      + +  Y+  I  D ER++   +K+ + 
Sbjct: 63  KTRTTVAKMLAAHDMAQVTLAHTEFLDRKAGFQKAVEAYDPLITEDDERALVEGLKSTYQ 122

Query: 125 EYLRQLGSFNNDILQKEMIKAQQDLQRSLPTF-EKLETAIDELLKLNLSYVDNNRSELTE 183
            Y+ +       I + +    +  +   +    E +ETA+ +L K+N      + +  T 
Sbjct: 123 GYIERAEKVYTLINENQAEAGRALVWGEMKVMAEGMETALGKLEKINDDSEAESSAAATS 182

Query: 184 LIDN--ISEFSVASIVALLAFMSAVTWLLTNLICSPLMQVVTQANAIAEGNLAHRLDRKT 241
           + +N  I    V  +  LL  + A  W LT  +  P+ Q +  +  IA G+L      + 
Sbjct: 183 VYENALIVTQGVMFLTVLLTVLLA--WRLTKSLAVPISQALHSSETIAAGDLRPSAINRE 240

Query: 242 IGHDELGELADACSKMQNNLRLMVEEIITSATQLAHAVDEVSAVSEQTSQGMQIQQEEVM 301
            G DE   L  +  +M+ NL   + ++  +A QLA A +E+SA+   ++  + +Q  E+ 
Sbjct: 241 -GTDEAALLLQSMERMRGNLSQTLSQVGDAAHQLASATEEMSALMVNSNADLVVQNSEIE 299

Query: 302 QIATAMAEMKSTVAEVARNTEVASDASRDSSQHANVGSQQMRAVNDSIQHVNQEIGRTEQ 361
             ATA+ EM   V EVARN    S  SR SS  A  G +++     SI  + + +G    
Sbjct: 300 MAATAVTEMSQAVDEVARNAVTTSVESRASSVSAREGQEELNQTVKSILELTRNVGTASV 359

Query: 362 RVLELESQAQQINMVVDVISNIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAGK 421
               L ++   I  V+DVI  ++EQTNLLALNAAIEAARAG+ GRGFAVVADEVR+LA +
Sbjct: 360 EAQALATRTLDITKVLDVIRAVSEQTNLLALNAAIEAARAGDAGRGFAVVADEVRALAHR 419

Query: 422 TQQSTGDIVEIIQNLQACAQKARETTNNSRELINHCVEQSQETQQAIEQIRHQSSQIADM 481
           T +ST +I  ++ ++Q   +        S E      +Q++     +  I      I + 
Sbjct: 420 TSESTREIETMVGHIQQGTKSTLLALEVSTEQAQRTKQQAESANAVLASIASSVMVIDER 479

Query: 482 TIQIASACGEQDSVSEELSRNIERINESAKQVAQGSSSAAQSCAELSQLASQLQDTVQRF 541
              IASA  EQ  V+ E+ RN+ RI + + Q A  +S    +   L++LAS L  T+ +F
Sbjct: 480 NTVIASASEEQALVAREVDRNLVRIRDLSAQSAVRTSQTGSASQSLAELASDLTITLGQF 539

Query: 542 RL 543
           +L
Sbjct: 540 KL 541