Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 640 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  248 bits (632), Expect = 6e-70
 Identities = 153/380 (40%), Positives = 221/380 (58%), Gaps = 9/380 (2%)

Query: 164 DELLKLNLSYVDNNRSELTELIDNISEFSVASIVALLAFMSAVTWLLTNLICSPLMQVVT 223
           +++ KL L   D   ++        ++ +   +  +L  ++AV  ++T  I  PL + + 
Sbjct: 270 EDMYKLQLDRRDQESAQA-----RTTQITCTLLAIILGIIAAV--IITRQITRPLRETLA 322

Query: 224 QANAIAEGNLAHRLDRKTIGHDELGELADACSKMQNNLRLMVEEIITSATQLAHAVDEVS 283
             + IA G+L   L       DELG L     +M   LR ++  I  S  Q+A A +E+S
Sbjct: 323 VVDRIASGDLTQTL--AVTRSDELGVLQQGIQRMGTTLRELIGGIRDSVVQIASAAEELS 380

Query: 284 AVSEQTSQGMQIQQEEVMQIATAMAEMKSTVAEVARNTEVASDASRDSSQHANVGSQQMR 343
           AV+EQTS G+  Q+ E  Q+ATAM EM +TVAEVARN E AS A+ ++ + A  G + + 
Sbjct: 381 AVTEQTSAGVNSQKVETDQVATAMHEMSATVAEVARNAEQASQAASNADREARDGDKVVG 440

Query: 344 AVNDSIQHVNQEIGRTEQRVLELESQAQQINMVVDVISNIAEQTNLLALNAAIEAARAGE 403
                I+ +  E+GR+   + ELE ++ +I  V+DVI  +AEQTNLLALNAAIEAARAGE
Sbjct: 441 EAIAQIERLANEVGRSVDAMTELEQESDKIGKVMDVIKAVAEQTNLLALNAAIEAARAGE 500

Query: 404 QGRGFAVVADEVRSLAGKTQQSTGDIVEIIQNLQACAQKARETTNNSRELINHCVEQSQE 463
            GRGFAVVADEVR LA +TQQST +I  ++  LQ+  ++      NSREL    V  S++
Sbjct: 501 AGRGFAVVADEVRGLAQRTQQSTVEIETLVAALQSGTRQVSSIMLNSRELTVSSVTLSRQ 560

Query: 464 TQQAIEQIRHQSSQIADMTIQIASACGEQDSVSEELSRNIERINESAKQVAQGSSSAAQS 523
              ++  I    S I  M  QIA+A  EQ +V+EE+SR+I  + + ++Q A  S   A S
Sbjct: 561 AGTSLGSITQTVSSIQAMNQQIAAAAEEQSAVAEEISRSIVNVRDVSEQTASASEETAAS 620

Query: 524 CAELSQLASQLQDTVQRFRL 543
             EL++L  QLQ  V RFR+
Sbjct: 621 SVELARLGGQLQTMVSRFRI 640