Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 546 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  254 bits (649), Expect = 6e-72
 Identities = 184/558 (32%), Positives = 295/558 (52%), Gaps = 27/558 (4%)

Query: 1   MAFFKNLAIGKKIAVAFGVIALINLAFGGYLYNSLHTIKSDVLNLTDDTLPSMMLVNGIK 60
           M +F N  +  K+ ++F + AL  L  G      +  + S + N+  ++L S+     + 
Sbjct: 1   MKWFYNARLSAKLFMSFALCALFTLGVGVIGSRGISALSSSLDNVFTNSLLSVTKSGEVT 60

Query: 61  YNMSSVRRAQISLLSS---TDEAEIAEDI-RWMNDHYQQIAQDLSRYERSIWTDHERSIF 116
            ++ +  R    LL++        + +DI   M+ +  Q  +  + Y  +   D ER+  
Sbjct: 61  ASVIAQNRDLYRLLAAMAGNAPQSVKDDILASMSANKTQAEKSYATYRATPLDDDERAAG 120

Query: 117 MPVKNLWNEYLRQLGSFNNDILQKEMIKAQQDLQRS-----LPTFEKLETAIDELLKLNL 171
             +   W  Y   +    +  L  ++  A+  +        L   ++L T ++       
Sbjct: 121 DQMDRDWPGYQALIEQAKSVALSGDIAGARAIIDGDVRSGYLKVMDQLTTIVNS------ 174

Query: 172 SYVDNNRSE-----LTELIDNISEFSVASIVALLAFMSAVTWL-LTNLICSPLMQVVTQA 225
               NNR        ++   N ++ ++   + L  F + V  L ++  I +P+   VT A
Sbjct: 175 ----NNRQAGEAAVASDQTQNSAQRNLYIGIGLSFFAAFVMGLFISRAISTPINTAVTNA 230

Query: 226 NAIAEGNLAHRLDRKTIGHDELGELADACSKMQNNLRLMVEEIITSATQLAHAVDEVSAV 285
             IA G+L   L   +  HDE G +  A S MQ+NL+  + +I ++A QLA A +E++AV
Sbjct: 231 RRIASGDLT--LPIASQYHDEAGMMLVALSDMQDNLKSTIGQISSAADQLASAAEELNAV 288

Query: 286 SEQTSQGMQIQQEEVMQIATAMAEMKSTVAEVARNTEVASDASRDSSQHANVGSQQMRAV 345
           +E++S+G+  Q +E+ Q A+A+ EM + V EVARN    S+ASR +S  A  G  Q R  
Sbjct: 289 TEESSRGLIRQNDEIQQAASAVNEMTAAVEEVARNAMSTSEASRQTSTDAAAGRDQARDA 348

Query: 346 NDSIQHVNQEIGRTEQRVLELESQAQQINMVVDVISNIAEQTNLLALNAAIEAARAGEQG 405
            ++I  V+ EI  +   V EL  + ++I  V+DVI  IAEQTNLLALNAAIEAARAGEQG
Sbjct: 349 VNAINTVSAEISSSTTMVEELAGRVREIGQVLDVIRGIAEQTNLLALNAAIEAARAGEQG 408

Query: 406 RGFAVVADEVRSLAGKTQQSTGDIVEIIQNLQACAQKARETTNNSRELINHCVEQSQETQ 465
           RGFAVVADEVR+LA +TQ STG+I  +I ++QA A +A     NSR L ++    +Q T 
Sbjct: 409 RGFAVVADEVRALAARTQASTGEIETMIGSVQASADQAVRAMANSRTLTSNTQTLAQATG 468

Query: 466 QAIEQIRHQSSQIADMTIQIASACGEQDSVSEELSRNIERINESAKQVAQGSSSAAQSCA 525
           Q++E+I    ++I D  + IA+A  EQ  V+ E+ RN+  I + + Q A G+   + S  
Sbjct: 469 QSLERIAQSVAEINDRNMLIATASEEQSHVAREVDRNLVNIQDLSAQTAAGAHQTSASSQ 528

Query: 526 ELSQLASQLQDTVQRFRL 543
           ELS+LA    + V +F++
Sbjct: 529 ELSRLAISFNNLVGKFKV 546