Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 558 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  215 bits (548), Expect = 3e-60
 Identities = 164/560 (29%), Positives = 281/560 (50%), Gaps = 42/560 (7%)

Query: 5   KNLAIGKKIAVAFGVIALINLAFGGYLYNSLHTIKSDVLNLTDDTLPSMMLVNGIKYNMS 64
           +   I  ++ + F + +L+ +A G +    +  I++    +    LPS+   + I   + 
Sbjct: 20  RRFKITLRLVICFAITSLLMVALGVFCLLQMQAIRTQGEAVESGALPSIATADAIAIGLV 79

Query: 65  SVRRAQISLLSSTDE--AEIAEDI---RWMNDHYQQIAQDLSRYERSIWTDHERSI---- 115
            +R     L+++ D+  A I   I   +  N+  +  ++ L+R +    T+H+  +    
Sbjct: 80  KLRSETTRLIANADDPGAVINSKINVEQLRNEVEKGFSEYLARVQSG--TEHDSIVALQD 137

Query: 116 ----FMP-----VKNLWNEYLRQLGSFNNDIL--QKEMIKAQQDLQRSLPTFEKLETAID 164
               FMP     +  +    L +  +  N +L  Q +++  Q  L R L T    ++A  
Sbjct: 138 AYKAFMPGLQDQIALIEQNKLDEARTLANTVLSLQGDLMDMQVQLLRELNT----QSAAA 193

Query: 165 ELLKLNLSYVDNNRSELTELIDNISEFSVASIVALLAFMSAVTWLLTNLICSPLMQVVTQ 224
            +     SY      E T +I      ++++I  +L     + W L+  I  P+ Q +  
Sbjct: 194 AVEAAGASY------EQTRII------ALSAIGLVLVLTLLLAWRLSVSIIHPVRQALHI 241

Query: 225 ANAIAEGNLA-HRLDRKTIGHDELGELADACSKMQNNLRLMVEEIITSATQLAHAVDEVS 283
           A+ IA+G+L+ H +     G DE  +L     +M+ NL   +++I  +ATQL+ +V E+ 
Sbjct: 242 ASTIADGDLSEHPIPD---GKDETAQLLITLGRMRTNLHSTIDQIYAAATQLSQSVQEMG 298

Query: 284 AVSEQTSQGMQIQQEEVMQIATAMAEMKSTVAEVARNTEVASDASRDSSQHANVGSQQMR 343
           +++E ++  +Q+Q  E+ Q A A+ +M     EVA N       S  S++ A  G +++ 
Sbjct: 299 SIAEASALNLQLQNTEIEQAAVAVNQMSQAAIEVAGNASNTVTESEASTRAAAQGQEKLS 358

Query: 344 AVNDSIQHVNQEIGRTEQRVLELESQAQQINMVVDVISNIAEQTNLLALNAAIEAARAGE 403
           A   SI+ + + +  +  +   L  + Q I+ ++DVI  IA QTNLLALNAAIEAARAGE
Sbjct: 359 ATILSIKALTENVLDSSHQAEGLAERTQSISSILDVIRAIANQTNLLALNAAIEAARAGE 418

Query: 404 QGRGFAVVADEVRSLAGKTQQSTGDIVEIIQNLQACAQKARETTNNSRELINHCVEQSQE 463
            GRGFAVVADEVRSLA +T  ST +I  +I  +Q   Q+   +  ++    N  +EQ+  
Sbjct: 419 AGRGFAVVADEVRSLAQRTSASTAEIEGLISGVQQSTQQTASSLRHTATQANLTMEQAAS 478

Query: 464 TQQAIEQIRHQSSQIADMTIQIASACGEQDSVSEELSRNIERINESAKQVAQGSSSAAQS 523
           T +A++ I   ++ I D  + IASA  +Q  V+ E+ RN+  I + + Q A G+     +
Sbjct: 479 TGEALQVIIQSTATINDRNLLIASAAEQQAQVATEVDRNLSSIRDLSSQTASGAQQTTVA 538

Query: 524 CAELSQLASQLQDTVQRFRL 543
              LS LA+ L   VQRF L
Sbjct: 539 SNALSMLATDLNLMVQRFVL 558