Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 658 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  204 bits (520), Expect = 6e-57
 Identities = 125/366 (34%), Positives = 212/366 (57%), Gaps = 4/366 (1%)

Query: 178 RSELTELIDNI-SEFSVASIVALLAFMSAVTWLLTNLICSPLMQVVTQANAIAEGNLAHR 236
           R E++E+  ++ ++ ++ S++A+L  + +  WLL + +  PL ++V QA+A+  G+L+ R
Sbjct: 296 RKEISEVTWHVGTQLAIGSLLAMLIAVISAIWLLRSKL-RPLSELVRQADALGAGDLSVR 354

Query: 237 LDRKTIGHDELGELADACSKMQNNLRLMVEEIITSATQLAHAVDEVSAVSEQTSQGMQIQ 296
           L+     +DE+G+L+ + +KM   L  MV  I T+A +++   + +S +S    +GM+ Q
Sbjct: 355 LN--VTSNDEIGQLSGSFNKMSEALSSMVSHIRTAAQEVSTRANVLSGLSGGAFEGMEQQ 412

Query: 297 QEEVMQIATAMAEMKSTVAEVARNTEVASDASRDSSQHANVGSQQMRAVNDSIQHVNQEI 356
             E+  +A A+ E  +T   +A N       +++++Q   +G   M   + S+Q +   +
Sbjct: 413 SGEITSMAGAVEEFSATSMNIADNMGNTERLAQENAQQTRIGRTSMEEASSSLQQIATSL 472

Query: 357 GRTEQRVLELESQAQQINMVVDVISNIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR 416
             T + +  L  ++Q+I  +V VI++IA+QTNLLALNAAIEAARAGEQGRGFAVVADEVR
Sbjct: 473 SSTAKVIDTLGQRSQEIGSIVGVITSIADQTNLLALNAAIEAARAGEQGRGFAVVADEVR 532

Query: 417 SLAGKTQQSTGDIVEIIQNLQACAQKARETTNNSRELINHCVEQSQETQQAIEQIRHQSS 476
           SLA +T+++T +I  +I ++Q     A  T      L+   +  + +   A+ QI  QS 
Sbjct: 533 SLASRTREATDEISGMIASIQQETGNAISTMQQGNTLMQEGLSLNAKVASALAQIDEQSR 592

Query: 477 QIADMTIQIASACGEQDSVSEELSRNIERINESAKQVAQGSSSAAQSCAELSQLASQLQD 536
                   I +A  EQ S +  LS N++ I  +  +  Q  S+ A +  EL+ LA++L+ 
Sbjct: 593 SAGHQFAAITTATQEQSSTATMLSSNLQSIAMANSEQRQVMSNLAITAQELNGLATELRH 652

Query: 537 TVQRFR 542
            V RFR
Sbjct: 653 EVDRFR 658