Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 673 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  232 bits (592), Expect = 3e-65
 Identities = 141/415 (33%), Positives = 242/415 (58%), Gaps = 16/415 (3%)

Query: 138 LQKEMIKAQQDLQRSLPTFEKLETAIDELLKLNLSYVDNNRSELT-ELIDNISEFSVASI 196
           L+   I + Q     L   EK    + E +K     ++   ++++ + +++I+  S+ ++
Sbjct: 266 LKSRQIDSTQLTSEKLTLVEKNALTVTEQMKRLAKDIETVTNDISNQALNDINSASLRTL 325

Query: 197 VALLAFMSAVTWLLTNLICSPLMQVVTQANA----IAEGNLAHRLDRKTIGHDELGELAD 252
           + L+     V  +++  +  PL + + + N     +A G+L H+LD    GHDE  EL+ 
Sbjct: 326 I-LVVIAIVVAVVISFAVVRPLKRSLDEVNGALNVLASGDLTHKLD--DTGHDEFAELSR 382

Query: 253 ACSKMQNNLRLMVEEIITSATQLAHAVDEVSAVSEQTSQGMQIQQEEVMQIATAMAEMKS 312
            C+++ ++LR ++  I+  + QLA A +E SA++ QT+ G+Q Q+ +V Q+ATA  E+ S
Sbjct: 383 NCNRLVDSLRSLIASILDRSNQLAAAAEETSAITSQTTIGIQEQKSQVDQVATATTELSS 442

Query: 313 TVAEVARNTEVASDASRDSSQHANVGSQQMRAVND----SIQHVNQEIGRTEQRVLELES 368
           +  +V     +++D +    + A+  +Q MR + D    +I  +  E+ +  + + ++ S
Sbjct: 443 SAHQV----NMSADDALSQIKQADEETQHMRTIADENKRTILSLADEVAKASKVINKVHS 498

Query: 369 QAQQINMVVDVISNIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAGKTQQSTGD 428
            +  I  ++DVI  IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLA +TQ ST +
Sbjct: 499 DSASIGSILDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQDSTRE 558

Query: 429 IVEIIQNLQACAQKARETTNNSRELINHCVEQSQETQQAIEQIRHQSSQIADMTIQIASA 488
           I ++I+ LQ   Q+A       +     CVE++++  QA++ I H   +  D    IA A
Sbjct: 559 IQQMIEVLQQGTQQAVAVMQLGQNQAQSCVEKTEQANQALQTISHSVHKAYDAGTHIAQA 618

Query: 489 CGEQDSVSEELSRNIERINESAKQVAQGSSSAAQSCAELSQLASQLQDTVQRFRL 543
             EQ+ VS+++S  +E I   +++ A G+   A+S  E+++LA +LQ +V+ FR+
Sbjct: 619 AQEQNLVSQQVSEKLEHIAAISEETALGAEQTAKSSHEVARLAEELQSSVKEFRV 673