Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 638 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  211 bits (538), Expect = 5e-59
 Identities = 124/369 (33%), Positives = 215/369 (58%), Gaps = 6/369 (1%)

Query: 178 RSELTELIDNIS-EFSVASIVALLAFMSAVTWLLTNLICSPLMQVVTQANAIA--EGNLA 234
           R+E+  L++  + +  V +++   AF+   T++  + +  P+ +V      I   EG+L 
Sbjct: 273 RAEVFALLEESAYQILVWTVLIAAAFIGLSTFVSAS-VSQPIAKVADMLQDIGQGEGDLR 331

Query: 235 HRLDRKTIGHDELGELADACSKMQNNLRLMVEEIITSATQLAHAVDEVSAVSEQTSQGMQ 294
            RL  +  G+DEL +LA   +     ++  + E+  ++ QL+HA  +V+  ++QT    Q
Sbjct: 332 QRLPVE--GNDELAQLAKGFNSFIEKIQHSIIEVTDTSVQLSHAAKDVANQAQQTQDDSQ 389

Query: 295 IQQEEVMQIATAMAEMKSTVAEVARNTEVASDASRDSSQHANVGSQQMRAVNDSIQHVNQ 354
           +Q+++ M + TA+ EM +TV E+A N   A+D ++D+   ++ G   +    D+I  ++Q
Sbjct: 390 LQKDQTMMVVTAINEMGATVHEIAGNAAQAADNAKDADNASSNGQIVVTRARDTINQLSQ 449

Query: 355 EIGRTEQRVLELESQAQQINMVVDVISNIAEQTNLLALNAAIEAARAGEQGRGFAVVADE 414
           ++ +    +  L +    I  ++DVI  +++QTNLLALNAAIEAARAGE GRGFAVVA+E
Sbjct: 450 DVEQVGNVIESLATHTTSIGSILDVIRAVSDQTNLLALNAAIEAARAGEAGRGFAVVAEE 509

Query: 415 VRSLAGKTQQSTGDIVEIIQNLQACAQKARETTNNSRELINHCVEQSQETQQAIEQIRHQ 474
           VR+LA +T  ST ++ ++I NLQ+ A +A E    S+      V+   E    + +I  Q
Sbjct: 510 VRNLASRTAASTDEVQKMIDNLQSEAARAVEAMTQSKSRSQEGVQAVDEASHTLTEISQQ 569

Query: 475 SSQIADMTIQIASACGEQDSVSEELSRNIERINESAKQVAQGSSSAAQSCAELSQLASQL 534
              I DM IQ+A+A  EQ +V E+++RN+  I+E  ++ ++ S + AQ+   L+QLA +L
Sbjct: 570 IGAITDMNIQVAAATEEQSTVVEDINRNVTEISEITQRTSETSQAVAQASQSLNQLAHRL 629

Query: 535 QDTVQRFRL 543
              V  F++
Sbjct: 630 DTLVAGFKV 638