Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 546 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  301 bits (770), Expect = 6e-86
 Identities = 188/553 (33%), Positives = 320/553 (57%), Gaps = 21/553 (3%)

Query: 4   FKNLAIGKKIAVAFGVIALINLAFGGYLYNSLHTIKSDVLNLTDDTLPSMMLVNGIKYNM 63
           FKN+ + +++   F +++L+ L    +    L  + S+   +T++ +PS+     +   +
Sbjct: 2   FKNMTLAQRLISVFFILSLLVLGVAWFSVVQLAGLHSNTTKITENLIPSIRSSAQMHIAL 61

Query: 64  SSVRRAQISLLSST---DEAEIAEDIRWMNDHYQQIAQDLSRYER-SIWTDHERSIFMPV 119
              RR +++++      D A I    +       +      +Y + +  ++ +  +F+ +
Sbjct: 62  LDARRNELNMVIDVMTHDSAAIEISKQRFETAKSEFEAGAQQYAKLNFVSEQDEQLFIKL 121

Query: 120 KNLWNEYLRQLGSFNNDILQKEMIKAQQDLQRSLPTFEKLETAIDELLKLNLSYVDNNRS 179
                +Y     S  + I Q +M  A  ++     T + LE A +E + L     +N+R+
Sbjct: 122 GEAAEKYFSAHSSLVSAIDQGDMASA--NIMIKTLTRQTLEVAGEETMNLRH---ENDRA 176

Query: 180 ELTELIDNISEFSVASIVALLA------FMSAVTWLLTNLICSPLMQVVTQANAIAEGNL 233
               ++ + + +  A +++++       F+  + +LL   I +P+M ++ Q + ++ GNL
Sbjct: 177 AQEMVLQSENAYKTAKMLSIIVGFSTIFFVVVMAFLLIRQIQNPIMWLLKQTHEVSAGNL 236

Query: 234 AHRLDRKTIGHDELGELADACSKMQNNLRLMVEEIITSATQLAHAVDEVSAVSEQTSQGM 293
            ++L+      DE G+LA++ ++MQ+NL ++V E+  S  QL+ A +E+S+V+  +S  M
Sbjct: 237 TNKLNMNAFARDEFGQLAESFNEMQDNLHMLVSEVSNSIVQLSSAAEEISSVALHSSNNM 296

Query: 294 QIQQEEVMQIATAMAEMKSTVAEVARNTEVASDASRDSSQHANVGSQQMRAVNDSIQHVN 353
           + QQ E+ Q+ATAM EM++TV +VARNT  A++A+  +S  A  GS+    VNDSI  ++
Sbjct: 297 ETQQNELNQLATAMHEMQATVQDVARNTNDAANAATQASDTATQGSE---TVNDSIVRID 353

Query: 354 QEIGRTEQRVL---ELESQAQQINMVVDVISNIAEQTNLLALNAAIEAARAGEQGRGFAV 410
           +  G  E   +   +L   ++ I MV++VI  IAEQTNLLALNAAIEAARAGEQGRGFAV
Sbjct: 354 KVAGAIEATAVVIRKLGDDSRNIGMVLEVIQGIAEQTNLLALNAAIEAARAGEQGRGFAV 413

Query: 411 VADEVRSLAGKTQQSTGDIVEIIQNLQACAQKARETTNNSRELINHCVEQSQETQQAIEQ 470
           VADEVR+LA +TQ ST  I  II  LQ  A +A ET   S+E++   V +++E  ++I +
Sbjct: 414 VADEVRTLAKRTQDSTSHINSIISELQLRANEAEETMQQSQEMMIETVCKAREAGESIAK 473

Query: 471 IRHQSSQIADMTIQIASACGEQDSVSEELSRNIERINESAKQVAQGSSSAAQSCAELSQL 530
           I    S I+ M IQIA+A  EQ +VSEEL+RN+  I+ +++ VA G+   A +C +LS L
Sbjct: 474 ISSSVSCISQMNIQIATATEEQGAVSEELNRNVANISGASEDVATGAKQMAMACNDLSHL 533

Query: 531 ASQLQDTVQRFRL 543
           A+QLQD V++F +
Sbjct: 534 ATQLQDMVKKFHI 546