Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 634 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  233 bits (594), Expect = 2e-65
 Identities = 139/352 (39%), Positives = 208/352 (59%), Gaps = 6/352 (1%)

Query: 196 IVALLAFM--SAVTWLLTNLICSPLMQVVTQANAIAEG--NLAHRLDRKTIGHDELGELA 251
           ++  +AF+  +A+ W +   I  P+ +     N IAEG  +L  R++ K+   DE+ +LA
Sbjct: 285 MIGFIAFLIGTAIAWFIAKSITRPIAETTNALNDIAEGEGDLTRRIEVKS--KDEIAQLA 342

Query: 252 DACSKMQNNLRLMVEEIITSATQLAHAVDEVSAVSEQTSQGMQIQQEEVMQIATAMAEMK 311
            A ++    +   V ++  S + LA + +E+SA++ +T Q  + Q  E  Q+ATAM EM 
Sbjct: 343 LAFNRFAEKIHATVAQVSDSTSLLATSAEEMSAITNETQQMAKRQHLETEQVATAMNEMA 402

Query: 312 STVAEVARNTEVASDASRDSSQHANVGSQQMRAVNDSIQHVNQEIGRTEQRVLELESQAQ 371
           +TV EVA N   A+DA+  +S+    G   +  V  +I  +  EI    + + ELE    
Sbjct: 403 ATVQEVAHNATDAADAATHASESTEHGKLLVEKVISTISLLADEIAHAAKAINELERNTA 462

Query: 372 QINMVVDVISNIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAGKTQQSTGDIVE 431
           QI+ V+ VI NIA+QTNLLALNAAIEAARAGEQGRGFAVVADEVR+LA +TQ ST +I +
Sbjct: 463 QIDSVLVVIRNIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQASTSEIQQ 522

Query: 432 IIQNLQACAQKARETTNNSRELINHCVEQSQETQQAIEQIRHQSSQIADMTIQIASACGE 491
           +I+ LQ  A+    T N S     +CV    E  +A+E I    S I+ M IQIASA  E
Sbjct: 523 MIEALQHSAKSTVSTMNTSTATTQNCVSLVHEAGEALEAITQAVSTISQMNIQIASAANE 582

Query: 492 QDSVSEELSRNIERINESAKQVAQGSSSAAQSCAELSQLASQLQDTVQRFRL 543
           Q +VS E+++N+  IN+      + +   A++  EL+QL+ +L   + +FR+
Sbjct: 583 QCAVSAEINKNVNNINDITINATESAVQTARAGDELAQLSMRLTTLLAQFRI 634