Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 634 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  232 bits (592), Expect = 3e-65
 Identities = 139/350 (39%), Positives = 205/350 (58%), Gaps = 5/350 (1%)

Query: 196 IVALLAFMSAVTWLLTNLICSPLMQVVTQANAIAEG--NLAHRLDRKTIGHDELGELADA 253
           ++ALL   +A+ W +   I  P+ +     N IAEG  +L  R++ K+   DE+ +LA A
Sbjct: 288 VIALL-IGTAIAWFIAKSITRPIAETTDALNDIAEGEGDLTRRIEVKS--KDEMAQLAQA 344

Query: 254 CSKMQNNLRLMVEEIITSATQLAHAVDEVSAVSEQTSQGMQIQQEEVMQIATAMAEMKST 313
            ++    +   V ++  S + LA + +E+SA++ +T Q    Q  E  Q+ATAM EM +T
Sbjct: 345 FNRFAEKIHATVAQVSDSTSLLATSAEEMSAITHETQQMANRQHLETEQVATAMNEMAAT 404

Query: 314 VAEVARNTEVASDASRDSSQHANVGSQQMRAVNDSIQHVNQEIGRTEQRVLELESQAQQI 373
           V EVA N   A+DA+  +S+    G   +  V  +I  +  EI +    + ELE    QI
Sbjct: 405 VQEVAHNATDAADAATHASESTEQGKLLVEKVISTISLLADEIAQAANAINELERNTTQI 464

Query: 374 NMVVDVISNIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAGKTQQSTGDIVEII 433
           + V+ VI NIA+QTNLLALNAAIEAARAGEQGRGFAVVADEVR+LA +TQ ST +I ++I
Sbjct: 465 DSVLVVIRNIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQASTTEIQQMI 524

Query: 434 QNLQACAQKARETTNNSRELINHCVEQSQETQQAIEQIRHQSSQIADMTIQIASACGEQD 493
           + LQ  A+    + N S      CV    E   A+E I    S I+ M IQIASA  EQ 
Sbjct: 525 ETLQQSAKATVSSMNTSTATTQSCVSLVHEAGSALEAITQAVSTISQMNIQIASAANEQC 584

Query: 494 SVSEELSRNIERINESAKQVAQGSSSAAQSCAELSQLASQLQDTVQRFRL 543
           +VS E+++N+  IN+ A    + +   A++  EL+QL+ +L   + +F++
Sbjct: 585 AVSAEINKNVNNINDIATNATESAMQTARAGDELAQLSMRLTTLLSQFKI 634