Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 543 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  229 bits (585), Expect = 2e-64
 Identities = 167/539 (30%), Positives = 282/539 (52%), Gaps = 16/539 (2%)

Query: 5   KNLAIGKKIAVAFGVIALINLAFGGYLYNSLHTIKSDVLNLTDDTLPSMMLVNGIKYNMS 64
           +NL I   +  AF +  +  L       + +  I      +++D LP++ ++  +    +
Sbjct: 2   RNLKISHLLLGAFAIPIIAILGLTMMAMSKMQVINDQSTVISNDWLPAVRVIERLNGQTA 61

Query: 65  SVRRAQISLLSSTDEAEIAEDIRWMNDHYQQIAQDLSRYERSIWTDHERSIFMPVKNLWN 124
            +R  +   + S DE ++ +  R +     QI   +  YE+ I  + ER+IF   K L+ 
Sbjct: 62  DLRVLESRHILSLDEGQMRDTERELEKTKAQIDDSIRTYEQLISGNKERNIFNDFKRLYK 121

Query: 125 EYLRQLGSFNNDILQKEMIKAQQDLQRSLPT--FEKLETAIDELLKLN-LSYVDNNRSEL 181
           EYL      +  +L        +D ++ L T   E      D LLKL+ L+Y      + 
Sbjct: 122 EYL----VVHQKLLILSRANKNEDAKQLLLTESLEAYNEYSDLLLKLSDLNY--KGAQDA 175

Query: 182 TELIDNISEFSVASIVALLAFMSAVTWL----LTNLICSPLMQVVTQANAIAEGNLAHRL 237
           +   D I + S+  ++ +L  +S +  +    ++  I + +  V +    +A G+L+ R+
Sbjct: 176 SSYGDVIYDESIKIMLFILVIVSLLVLVTSTAISKFIITSIKTVQSFMAKLANGDLSDRI 235

Query: 238 DRKTIGHDELGELADACSKMQNNLRLMVEEIITSATQLAHAVDEVSAVSEQTSQGMQIQQ 297
               IG++ELG LA  C++  + +  M E++IT A   A + + +++   Q     Q   
Sbjct: 236 --ADIGNNELGVLAQGCNETADKISEMTEQLITVADNTATSAEILASTMNQVEHNSQQML 293

Query: 298 EEVMQIATAMAEMKSTVAEVARNTEVASDASRDSSQHANVGSQQMRAVNDSIQHVNQEIG 357
            +V QIATA+ EM ST  EV++N   A  ++ ++  + + G++ +   ++    +   I 
Sbjct: 294 VQVEQIATALNEMSSTALEVSKNATEAETSAAEAMGNVSEGNKSLGESDNISVKIGAAIR 353

Query: 358 RTEQRVLELESQAQQINMVVDVISNIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRS 417
            +   V +L+  + +I  V+DVI++I+EQTNLLALNAAIEAARAGE GRGFAVVADEVRS
Sbjct: 354 DSGAIVNQLKDYSIEIGSVIDVITSISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRS 413

Query: 418 LAGKTQQSTGDIVEIIQNLQACAQKARETTNNSRELINHCVEQSQETQQAIEQIRHQSSQ 477
           LA KTQQST DI EII  LQ+ A+KA      +  L++     S++ + A + I    + 
Sbjct: 414 LAAKTQQSTIDIQEIISKLQSQAEKADHYMKANTSLLDESQMVSEKVRSAFQGISASVNA 473

Query: 478 IADMTIQIASACGEQDSVSEELSRNIERINESAKQVAQGSSSAAQSCAE-LSQLASQLQ 535
           I+++   +A+A  EQ SV+E++SRNI    E   Q   G  +A+++C + LS+   Q Q
Sbjct: 474 ISNVNTVVATASSEQSSVTEDISRNISSTVEMVDQNVVGIGNASKACHDVLSEAGKQKQ 532



 Score = 32.3 bits (72), Expect = 5e-05
 Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 7/127 (5%)

Query: 410 VVADEVRSLAGKTQQSTGDIVEIIQNLQACAQKARETTNNSRELINHCVEQSQETQQAIE 469
           V+A      A K  + T  ++ +  N    A+    T N     + H    SQ+    +E
Sbjct: 245 VLAQGCNETADKISEMTEQLITVADNTATSAEILASTMNQ----VEH---NSQQMLVQVE 297

Query: 470 QIRHQSSQIADMTIQIASACGEQDSVSEELSRNIERINESAKQVAQGSSSAAQSCAELSQ 529
           QI    ++++   ++++    E ++ + E   N+   N+S  +    S     +  +   
Sbjct: 298 QIATALNEMSSTALEVSKNATEAETSAAEAMGNVSEGNKSLGESDNISVKIGAAIRDSGA 357

Query: 530 LASQLQD 536
           + +QL+D
Sbjct: 358 IVNQLKD 364