Pairwise Alignments

Query, 385 a.a., sel1 repeat family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 693 a.a., Sel1 domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score = 51.2 bits (121), Expect = 9e-11
 Identities = 55/204 (26%), Positives = 86/204 (42%), Gaps = 15/204 (7%)

Query: 66  HIPTILFLAKEAERNSLKEALFWYEKAAHLDNIPAMYG---IVRVCQRIREDVIAKEKAK 122
           ++ +I F  +  ERN+ +  L  + KAA ++N  A+Y    I R    ++ D  AK  + 
Sbjct: 332 NMASIYFNGEYVERNT-ELGLELFNKAATMNNTQALYNLGIIYRDGNTVKRDR-AKALSF 389

Query: 123 FWQTCVRGVEGDLAAKFETGMAWLYGRGVEVNVSRGIGLIQEAAEANFIDAILFMGGWCV 182
           F Q    G+E    A FE G A+  G G E N    +  + ++A  N + A  ++G    
Sbjct: 390 FQQAADLGLE---RAYFEVGKAYHLGLGTEKNDQLALPYLLKSANNNSL-ATHYLGVIYY 445

Query: 183 SKDNIAPTPSDSTFWYEKAARMGSAEGMMRLGQNLLHGIGGASDFPMACYWLERASEKGH 242
             D I      +  ++EKA   G  +    LGQ    G     D  +A  W ++  +  H
Sbjct: 446 KSDLIEHDIDKAITYFEKAYSQGEIDPTASLGQIYEFGSPSHHDVDLAIAWYKKGIKGEH 505

Query: 243 PEA------MYHAGEAWIDRGAHG 260
           P A      +Y  GE       HG
Sbjct: 506 PYAYMRLALLYMNGEGVAKNMQHG 529



 Score = 44.3 bits (103), Expect = 1e-08
 Identities = 38/146 (26%), Positives = 54/146 (36%), Gaps = 37/146 (25%)

Query: 134 DLAAKFETGMAWLYGRGVEVNVSRGIGLIQEAAEANFIDAILFMGGWCVSKDNIAPTPSD 193
           D  A    G  +  G GVE ++ + I L Q A E                          
Sbjct: 577 DSTAANNLGEMYRLGLGVEQDIEQAISLYQSAVE-------------------------- 610

Query: 194 STFWYEKAARMGSAEGMMRLGQNLLHGIGGASDFPMACYWLERASEKGHPEAMYHAGEAW 253
              W+      G A  M+ L +  L G G   D  +   WL++A+E  + EA Y  G+  
Sbjct: 611 ---WH------GQATAMLNLSELYLEGEGVPVDEKLGLSWLKKAAETDNSEAQYRLGKYL 661

Query: 254 IDRGAHGKAIAYIWLFLSASMGYEPA 279
           +DR     +   IW+  SA  G E A
Sbjct: 662 LDRNV--TSAGKIWMSRSADAGNEKA 685



 Score = 35.8 bits (81), Expect = 4e-06
 Identities = 43/205 (20%), Positives = 85/205 (41%), Gaps = 5/205 (2%)

Query: 78  ERNSLKEALFWYEKAAHLDNIPAMYGIVRV-CQRIREDVIAKEKAKFWQTCVRGVEGDLA 136
           E++ +K++L WY+ AA   +  A Y +  +    I  +V  K+   + Q  V    G  A
Sbjct: 199 EKDKVKQSLKWYQLAADAGDASAQYNLATLYFDGIATEVDPKQGIHYLQLAVEQNHGS-A 257

Query: 137 AKFETGMAWLYGRGVEVNVSRGIGLIQEAAEANFIDAILFMGGWCVSKDNIAPTPSDSTF 196
             +   M + +G  VE +    I L Q AAE     +++ +  +  S   +      +  
Sbjct: 258 TGYLANM-YDFGWFVEQDKKLAIQLYQRAAELGDAGSMVNLATFFESGQFVPQDIDMALQ 316

Query: 197 WYEKAARMGSAEGMMRLGQNLLHGIGGASDFPMACYWLERASEKGHPEAMYHAGEAWIDR 256
            Y+ AA+  +A  +  +     +G     +  +      +A+   + +A+Y+ G  + D 
Sbjct: 317 LYQLAAQQNNALALNNMASIYFNGEYVERNTELGLELFNKAATMNNTQALYNLGIIYRDG 376

Query: 257 GA--HGKAIAYIWLFLSASMGYEPA 279
                 +A A  +   +A +G E A
Sbjct: 377 NTVKRDRAKALSFFQQAADLGLERA 401



 Score = 34.3 bits (77), Expect = 1e-05
 Identities = 34/154 (22%), Positives = 64/154 (41%), Gaps = 18/154 (11%)

Query: 71  LFLAKEAERNSLKEALFWYEKAAH------LDNIPAMYGI-VRVCQRIREDVIAKEKAKF 123
           LF      +   ++A ++YE A         +N+  MY + + V Q I + +   + A  
Sbjct: 551 LFFFGNQIKQDYQQARYFYELALKQQDSTAANNLGEMYRLGLGVEQDIEQAISLYQSAVE 610

Query: 124 WQTCVRGVEGDLAAKFETGMAWLYGRGVEVNVSRGIGLIQEAAEANFIDAILFMGGWCVS 183
           W        G   A       +L G GV V+   G+  +++AAE +  +A   +G + + 
Sbjct: 611 WH-------GQATAMLNLSELYLEGEGVPVDEKLGLSWLKKAAETDNSEAQYRLGKYLLD 663

Query: 184 KDNIAPTPSDSTFWYEKAARMGSAEGMMRLGQNL 217
           ++      S    W  ++A  G+ + +  L Q L
Sbjct: 664 RN----VTSAGKIWMSRSADAGNEKAIEYLQQKL 693