Pairwise Alignments

Query, 385 a.a., sel1 repeat family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 512 a.a., Sel1 domain-containing protein (RefSeq) from Shewanella sp. ANA-3

 Score = 42.4 bits (98), Expect = 3e-08
 Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 4/150 (2%)

Query: 83  KEALFWYEKAAHLDNIPAMYGIVRVCQRIREDVIAKEKAKFWQTCVRGVEGDLAAKFETG 142
           K + +WY KAA +D  P    ++ +   +  +    E+ +     ++        +F+  
Sbjct: 89  KASEYWYRKAAEID--PQYLPMLTLTSLVASEAQTPEQLREQVEQLKASAEVGQVEFQYE 146

Query: 143 MAWLYGRG--VEVNVSRGIGLIQEAAEANFIDAILFMGGWCVSKDNIAPTPSDSTFWYEK 200
           +A+LY R   ++ + S+ I   ++AA     DA   +G      + + P  S +  ++EK
Sbjct: 147 LAYLYLRQAFLDPDASQAIYWFEKAAAQGNQDAYYHLGTLYWHDERVTPDYSKAREYFEK 206

Query: 201 AARMGSAEGMMRLGQNLLHGIGGASDFPMA 230
           A   G       LG  L  G GG  D   A
Sbjct: 207 AVAAGDEHAKDNLGHMLASGQGGPKDLVRA 236



 Score = 38.5 bits (88), Expect = 4e-07
 Identities = 48/197 (24%), Positives = 70/197 (35%), Gaps = 12/197 (6%)

Query: 189 PTPSDSTFWYEKAARMGSAEGMMRLGQNLLHGIGGASDFPMACYWLERASEKGHPEAMYH 248
           P  S + +W+EKAA  G+ +    LG    H      D+  A  + E+A   G   A  +
Sbjct: 159 PDASQAIYWFEKAAAQGNQDAYYHLGTLYWHDERVTPDYSKAREYFEKAVAAGDEHAKDN 218

Query: 249 AGEAWIDRGAHGKAIAYIWLFLSASMGYEPAKNLRDLVGGK---LGVESIVGLQALAKPL 305
            G          K +      LS    Y    + R    GK    G +  V        L
Sbjct: 219 LGHMLASGQGGPKDLVRAEALLSE---YAAENDFRQYYLGKRFLYGEDFAVDYGKARHWL 275

Query: 306 QRKLATSSVTKHSMIRALNKLYKRQIPIPTKDVVDPLAEQEAESLIDLIEPNALNDLPHV 365
           ++  AT +V     +  L  L       P  D     A  E E+L    +  AL  L  +
Sbjct: 276 EKSCATDNVFAKLALAHLKLL------DPQTDDDYQQARTEFETLASQWQEEALFGLGKI 329

Query: 366 ASERLDFSQGPIDSLPF 382
             E L  S+ PI +L +
Sbjct: 330 YEEGLGVSRQPIKALMY 346



 Score = 36.6 bits (83), Expect = 2e-06
 Identities = 49/191 (25%), Positives = 69/191 (36%), Gaps = 46/191 (24%)

Query: 155 VSRGIGLIQEAAEANFIDAILFMGGWCVSKDNIAPT-PSDSTFWYEKAARM--------- 204
           V+ G+  IQ+A +  F  A + M      +    P  P  S +WY KAA +         
Sbjct: 51  VNSGLDYIQQAVDKGFAVAAIAMAELYSGRFPQVPADPKASEYWYRKAAEIDPQYLPMLT 110

Query: 205 ----------------------------GSAEGMMRLGQNLLHGIGGASDFPMACYWLER 236
                                       G  E    L    L       D   A YW E+
Sbjct: 111 LTSLVASEAQTPEQLREQVEQLKASAEVGQVEFQYELAYLYLRQAFLDPDASQAIYWFEK 170

Query: 237 ASEKGHPEAMYHAGEA-WIDRGA---HGKAIAYIWLFLSASMGYEPAK-NL-RDLVGGKL 290
           A+ +G+ +A YH G   W D      + KA  Y    ++A  G E AK NL   L  G+ 
Sbjct: 171 AAAQGNQDAYYHLGTLYWHDERVTPDYSKAREYFEKAVAA--GDEHAKDNLGHMLASGQG 228

Query: 291 GVESIVGLQAL 301
           G + +V  +AL
Sbjct: 229 GPKDLVRAEAL 239



 Score = 26.2 bits (56), Expect = 0.002
 Identities = 10/17 (58%), Positives = 12/17 (70%)

Query: 197 WYEKAARMGSAEGMMRL 213
           WY KAA +GS +GM  L
Sbjct: 423 WYRKAADLGSQDGMQAL 439