Pairwise Alignments

Query, 306 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 287 a.a., HTH-type transcriptional regulator hdfR from Pseudomonas fluorescens FW300-N2E2

 Score =  137 bits (344), Expect = 4e-37
 Identities = 88/283 (31%), Positives = 143/283 (50%), Gaps = 13/283 (4%)

Query: 13  MDVKVFRTFLELAKVRHFGRAAENLYLTQAAVSARIKQLENHFDAQLFTRDRNNIKLTSA 72
           MD+ + RTFLE+ +      AAE L++TQ A++AR+++LE+     LF R+R   +LTS 
Sbjct: 1   MDIDLARTFLEIVRHGSLAAAAEKLHVTQTAITARVQKLESQLGCALFVRNRAGARLTSD 60

Query: 73  GERLVGYAEVMVATLQQAKFELSLESGKALQLTLGGTPNIWDAYLQHCLSRITDTFEGYG 132
           GE  V YA  +V T + A+ +L L  G    L LGG  ++ +  +      +     G+ 
Sbjct: 61  GEAFVVYANQLVQTWEAARRDLPLPEGYRNVLHLGGEVSLCNPLMLAWAGELRQKIPGHA 120

Query: 133 FLAEVMGREQLNRGLLERTLDMAFALDPIKAEELQCKKVAD--LVLVLVSTKPDDADSVF 190
              ++   E+L + L    LD A    P     LQ +++ +  L+LV ++ +P+      
Sbjct: 121 LRMDIRDGEKLLQQLELGLLDAAVVYQPEYWPRLQVEQLLEEKLILVRLAARPEP----- 175

Query: 191 ENRYVYVDWGARFASEHADRHPKAPAPFLRTSTARIALDFILEKGGSAYLPQTMVQPLLD 250
              YVY+DW A F  +H    P      +  +   +AL +ILE GGS Y    +VQ  LD
Sbjct: 176 ---YVYIDWSADFRRQHDTALPDKAKAAVTFNLGPLALQYILENGGSGYFRTRVVQSYLD 232

Query: 251 AGQLHRVSEVNDWQRPLYLSYRKNSSSI---EAIVQVEKLMKT 290
           +G L RV +  ++  P YL Y ++  S    +A   + +++KT
Sbjct: 233 SGILERVPKAPEFNYPTYLVYSRDRDSAALQQAFEVLREIVKT 275