Pairwise Alignments

Query, 306 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 286 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  229 bits (585), Expect = 4e-65
 Identities = 122/272 (44%), Positives = 174/272 (63%), Gaps = 1/272 (0%)

Query: 13  MDVKVFRTFLELAKVRHFGRAAENLYLTQAAVSARIKQLENHFDAQLFTRDRNNIKLTSA 72
           MD  + +TFLE+++ RHFG+AAENLYLT++AVS R+KQLE+     LF R RNNI+ T A
Sbjct: 1   MDTDLLKTFLEVSRTRHFGQAAENLYLTRSAVSFRVKQLESILGVALFERQRNNIQPTPA 60

Query: 73  GERLVGYAEVMVATLQQAKFELSLESGKALQLTLGGTPNIWDAYLQHCLSRITDTFEGYG 132
           GER++G+AE ++   ++AK ++SL   ++ QL +G  PNIWDAYLQ  L  +     G  
Sbjct: 61  GERMLGHAEAVLTAWERAKQDVSLSQLQSTQLAIGAGPNIWDAYLQGYLQHLHVGLPGIA 120

Query: 133 FLAEVMGREQLNRGLLERTLDMAFALDPIKAEELQCKKVADLVLVLVSTKPDDA-DSVFE 191
              EV+    + R L++RTLD+A + DP K ++ +  ++  + L+LVS   D A ++V  
Sbjct: 121 LRTEVLPLTVMTRQLMDRTLDLAISFDPPKLDQFELIQLGQINLLLVSKSMDMAVNAVQA 180

Query: 192 NRYVYVDWGARFASEHADRHPKAPAPFLRTSTARIALDFILEKGGSAYLPQTMVQPLLDA 251
            +YV VDWG  F   HA  +   P P L TS+ARIALDFIL  GG A+LP+ +VQPLL  
Sbjct: 181 GQYVKVDWGTAFNIIHAQDYAALPVPTLHTSSARIALDFILNNGGCAFLPEHLVQPLLSK 240

Query: 252 GQLHRVSEVNDWQRPLYLSYRKNSSSIEAIVQ 283
           G+LH V+  N   R +Y++Y   +  +E I Q
Sbjct: 241 GELHLVAGANAISRSVYVAYWAENDRLEHIKQ 272