Pairwise Alignments

Query, 452 a.a., 3-methyladenine DNA glycosylase from Vibrio cholerae E7946 ATCC 55056

Subject, 486 a.a., Transcriptional Regulator, AraC family (NCBI) from Rhodospirillum rubrum S1H

 Score =  333 bits (853), Expect = 1e-95
 Identities = 201/471 (42%), Positives = 266/471 (56%), Gaps = 30/471 (6%)

Query: 11  VCQRARMSRDPRFDGRFFVAVKTTGIFCRPICPANLPKEENVEYFSSQALAVSAGYRPCL 70
           +C RA  +RD RFDGRFF  V+TTGIFCRPICPA  P  EN  + ++ A A++AG+RPCL
Sbjct: 14  LCHRAVAARDKRFDGRFFTCVRTTGIFCRPICPARTPAMENCLFVATAAQALAAGFRPCL 73

Query: 71  RCRPESAPHSWAWKGAETTFLRALTLIEQGELD-GSLETLASRLGISDRYLRQLFQRHLG 129
           RCRPE+AP    W G   +  RAL LI +G LD GS+  LA RLG+ +R+LR+LF  HLG
Sbjct: 74  RCRPEAAPGLGGWLGTAASVNRALALIGEGALDEGSVAALAERLGLGERHLRRLFLHHLG 133

Query: 130 MPPKQYAQIQQLMFAKQLLHTSQISITEVAYASGFQSTRRFNDAFQKLFRLTPTQVRRER 189
           + P   AQ Q+L+FAK L+  + + +TE+A A+G+ S RRFN A +  +   PT +RR +
Sbjct: 134 ISPGAVAQAQRLLFAKTLISDTALPMTEIALAAGYGSLRRFNHALRTAYGCPPTALRRAK 193

Query: 190 AAL---PSRNHLSLAFRGPFDWAHMLDFYRLRAIEGMELIDEQSYQRHFVLGEGTGWFKA 246
            A         L LA R PFDW  +L F+R RA+ G+E ++  +Y R   +G   G    
Sbjct: 194 GAAIVGEGGPVLRLAARQPFDWPGLLAFFRQRAVPGLERVEGDTYVRAIAIGAARGVVTI 253

Query: 247 SMAQSHLDIEFEMERLSDLRHLVARLRRMFDLDADLISIEAHL---EQLAPGLVRRTGIR 303
             +   L +   ++R   L  LVARLRR+FDLDAD+ +I AHL     LAP +  R G+R
Sbjct: 254 RGSAEGLVVTPSLDRPEGLAALVARLRRVFDLDADIGAIGAHLGADPLLAPLVAARPGLR 313

Query: 304 IPGVWNAWEAGVRAVLGQQVSVKAAIGQLNLLVS------TLAASEGSTRYFPTPEQVQM 357
           +PG W+ +E  VRA+LGQQVSV AA      LV       T A   G +R FPT  ++  
Sbjct: 314 VPGAWDGFELAVRAILGQQVSVAAATTLAGRLVGAFGEPLTNAPPAGPSRLFPTAARLAE 373

Query: 358 SDLSFLRMPERRKETLKRLADYVRLHP--------MDSPMAWL-SLSGIGPWTVDYAQLR 408
           +DL  L +   R + +  LA  V   P        +DS +A L  L GIGPWT  Y  LR
Sbjct: 374 ADLGGLGLTTARAKAISGLARAVVETPGLLDPGPDLDSAVARLCRLPGIGPWTAQYIALR 433

Query: 409 GESRSHCFLTGDLIVKKALAK--------FPQLTAESVAPWGSYATFHCWS 451
               +     GD+ V +ALA+             AE   PW SYA  H WS
Sbjct: 434 ALGEADALPVGDIGVLRALAEDGVRPTPAALLARAEDWRPWRSYAVLHLWS 484