Pairwise Alignments

Query, 452 a.a., 3-methyladenine DNA glycosylase from Vibrio cholerae E7946 ATCC 55056

Subject, 503 a.a., AraC family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  390 bits (1002), Expect = e-113
 Identities = 223/492 (45%), Positives = 295/492 (59%), Gaps = 49/492 (9%)

Query: 9   AEVCQRARMSRDPRFDGRFFVAVKTTGIFCRPICPANLPKEENVEYFSSQALAVSAGYRP 68
           AE  + AR+SRD RFDG FFV V +TGIFCRPICPA   KE NV YF     A  AG RP
Sbjct: 10  AEQYRTARLSRDARFDGLFFVGVFSTGIFCRPICPAVPAKEANVRYFDDALSAAQAGLRP 69

Query: 69  CLRCRPESAPHSWAWKGAETTFLRALTLIEQGELDG----SLETLASRLGISDRYLRQLF 124
           CLRCRP+SAP S  W G +T+  RA++LI+ G L G     +  LA RLGIS+RYLRQLF
Sbjct: 70  CLRCRPDSAPGSNPWLGKQTSLNRAMSLIDAGVLCGPQAIPMTGLAERLGISERYLRQLF 129

Query: 125 QRHLGMPPKQYAQIQQLMFAKQLLHTSQISITEVAYASGFQSTRRFNDAFQKLFRLTPTQ 184
              LG  PKQYA  QQLMFAKQLLH +++ IT+VAYA+GF S RRFN+ F++  +LTP++
Sbjct: 130 HDSLGTSPKQYALYQQLMFAKQLLHQTKMPITQVAYAAGFNSVRRFNEIFRQQLQLTPSE 189

Query: 185 VRRE--RAALPSRN-HLSLAFRGPFDWAHMLDFYRLRAIEGMELIDEQSYQRHFVLGEGT 241
           +R+   + +LP +   L LA+R P+DW H+  F+  RA+  ME +DEQSY R FVLG   
Sbjct: 190 IRKATGQPSLPVQGLTLKLAYRPPYDWQHLRSFFAQRAVPEMEWLDEQSYGRSFVLGAAK 249

Query: 242 GWFKASMAQS----HLDIEF-EMERLSDLRHLVARLRRMFDLDADLISIEAHLEQLAPGL 296
           G+F A  ++     H+ I   E + LS L+ +++ +RR+ DLDAD+++I   L+ L   L
Sbjct: 250 GYFCAVHSEQEACFHVTIHLAEADSLSQLKGIISHIRRILDLDADMLTIGDKLQALGKAL 309

Query: 297 VR-RTGIRIPGVWNAWEAGVRAVLGQQVSVKAAIGQLNLLVS----TLAASEGSTRYFPT 351
            +   G+R+PGVW+ +EA  RA+LGQQVSV  AI  L  LV+    T++ +E + R FPT
Sbjct: 310 PQVSPGLRLPGVWSPFEAACRAILGQQVSVTQAIKLLGQLVADHGETISLNEKTVRLFPT 369

Query: 352 PEQVQMSDLSFLRMPERRKETLKRLADYVRLHPMDSPMAWLSLSGIGPWTVDYAQLRGES 411
           P  +  + L  L+MP  RKE ++ LA +V  +P      WL + GIGPWT+DY +LRG S
Sbjct: 370 PAALVDASLDGLKMPGIRKEAIRALAAFVMANPESEIDDWLQIKGIGPWTLDYVRLRGLS 429

Query: 412 RSHCFLTGDLIVKKAL--------------------------------AKFPQLTAESVA 439
                L GDL+VK+ L                                    Q     VA
Sbjct: 430 LPDVLLVGDLVVKQQLLVNLRPEPSSCDGEPAEDEDPKAAKKRAQAQYQALSQAVLRQVA 489

Query: 440 PWGSYATFHCWS 451
           PWGSY T   W+
Sbjct: 490 PWGSYLTLQLWN 501