Pairwise Alignments

Query, 452 a.a., 3-methyladenine DNA glycosylase from Vibrio cholerae E7946 ATCC 55056

Subject, 542 a.a., Ada regulatory protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  365 bits (938), Expect = e-105
 Identities = 225/514 (43%), Positives = 291/514 (56%), Gaps = 68/514 (13%)

Query: 7   LSAEVCQRARMSRDPRFDGRFFVAVKTTGIFCRPICPANLPKEENVEYFSSQALAVSAGY 66
           LSA VC+ AR SRDPRFDG+FFV V TTGI+CR +CPA  PKEENV YF S   A  AG 
Sbjct: 28  LSASVCREARTSRDPRFDGKFFVGVLTTGIYCRTVCPAVAPKEENVRYFDSAIKAAQAGL 87

Query: 67  RPCLRCRPESAPHSWAWKGAETTFLRALTLIEQGELDG----SLETLASRLGISDRYLRQ 122
           RPCLRCRP+SAP S  WKG  TT  RA+ LIE G L G    ++E LA +LGIS RYL +
Sbjct: 88  RPCLRCRPDSAPGSNPWKGTGTTLDRAIGLIEAGALSGEHGLTVEALADKLGISSRYLNK 147

Query: 123 LFQRHLGMPPKQYAQIQQLMFAKQLLHTSQISITEVAYASGFQSTRRFNDAFQKLFRLTP 182
           LF    G  PKQYA  +QL+FAKQLLH +Q+ IT++A A+GF S RRFN+AFQ+  +LTP
Sbjct: 148 LFTSGFGTSPKQYALYRQLLFAKQLLHQTQLPITQIALAAGFNSIRRFNEAFQQALQLTP 207

Query: 183 TQVRRER------------------AALPSRN-HLSLAFRGPFDWAHMLDFYRLRAIEGM 223
           TQ+R+                     A+P+ +  L   +R P DW   L FYRLRA+ GM
Sbjct: 208 TQLRKSSQKSAAKIDEGEGSDTACPQAMPAHSLSLYQYYRPPLDWQAQLAFYRLRAVAGM 267

Query: 224 ELID-------EQSYQRHFVLGEG-TGWFKASMAQSHLDIEFEMER------------LS 263
           E          E+  Q    L  G T       A  H+  E  + R            ++
Sbjct: 268 EWFSNTDNDCLEKIAQDKQALEYGRTLQIDDIRAVVHIIHEAHLHRFKLTLTFTPDSPIA 327

Query: 264 DLRHLVARLRRMFDLDADLISIEAHLEQLAP-GLVRRTGIRIPGVWNAWEAGVRAVLGQQ 322
            L+ L+ ++RR+ DLDAD+  IE +L++L    L+ ++G+RIPG  + +EAG RA+LGQQ
Sbjct: 328 GLQKLITQVRRILDLDADMQQIEHNLQRLTDLKLIPKSGLRIPGAGSLFEAGCRAILGQQ 387

Query: 323 VSVKAAIGQLNLLVST----LAASEGSTRYFPTPEQVQMSDLSFLRMPERRKETLKRLAD 378
           V+V  A   LNLLV       + +    R FP P+ ++ + L  L+MP  RK  L  LA 
Sbjct: 388 VTVVQATKLLNLLVDAYGERFSLNGREYRLFPIPQAIRGASLDELKMPGARKLALNALAA 447

Query: 379 YVRLHPMDSPMAWLSLSGIGPWTVDYAQLRGESRSHCFLTGDLIVKK------------- 425
           ++   P  S   WL + GIGPWT+ YA+LRG    + FL  DLIVKK             
Sbjct: 448 FICERPNASVDDWLEVKGIGPWTIAYAKLRGLGEPNIFLHTDLIVKKQLLVSVAEQNGLD 507

Query: 426 --ALAKFPQLT-----AESVAPWGSYATFHCWSH 452
             AL +   LT     +  +APWGSY TF  WS+
Sbjct: 508 AQALKQLDYLTLCQRISADIAPWGSYLTFQLWSN 541