Pairwise Alignments

Query, 331 a.a., porin from Vibrio cholerae E7946 ATCC 55056

Subject, 316 a.a., porin (RefSeq) from Shewanella loihica PV-4

 Score = 60.8 bits (146), Expect = 4e-14
 Identities = 83/330 (25%), Positives = 127/330 (38%), Gaps = 41/330 (12%)

Query: 20  LAATVYDAEGTSLKVGGRLEFRGDFNGNDKGEEIEG---TMLNKSRVRLNVAGETDIGAG 76
           LA+ +  A   S      L   G  N   +  +++G   T +  +  R  V G  ++ + 
Sbjct: 10  LASALATATLASAHAAEPLTVYGKLNVTAQSNDVDGDATTTIQSNASRFGVKGAFELSSS 69

Query: 77  MKGFGFWEAEQGVKSSAGTSTEQETTFKQRYMYVGMKGDFGSLSFGRQNTAGVQISDMSD 136
           ++ F   E E        T    +  F  R  +VG+KG+FG+ S GR +T   Q     D
Sbjct: 70  LEAFYTVEYE------VDTGDAAKENFLARNQFVGLKGNFGAFSVGRNDTMLKQSQGKVD 123

Query: 137 -IGTFTGDQKAFVSAGNEQINNTIAY-GYDFESFKLKASYIAD---DQKNADGYGLSGIY 191
                +GD K  +  G  +I  T  Y    F  FK+  +Y A+    Q   DG+ ++ +Y
Sbjct: 124 QFNDLSGDLK-HLFKGENRIEQTATYMTPSFSGFKVGVTYAAEGASSQYGQDGFSVAAMY 182

Query: 192 SAPFGLDIGLGYAANDLGTDKGSADQIIAGLGYTMGDLYFGATYTTGDKDDKAD------ 245
                L     +A+    +D    + + A +   +  L  G  Y   ++  K D      
Sbjct: 183 -GDAKLKKSPIFASIAYDSDVKGYEVVRATVQGKIAGLKIGGMYQQQEETYKKDGTAVVG 241

Query: 246 -TEFTGIEVSAQYKITKEFRLIAAYQNQEEETKNVTKDKADFFELTGRYDF---TKNFRS 301
               TG  VSA Y I     L A YQ+ E        DK D + + G Y     TK F  
Sbjct: 242 ADSKTGYLVSAAYTIDAVV-LKAQYQDME--------DKGDSWSVGGDYKLGKPTKLFAF 292

Query: 302 YLAYKANGLDDKDAGYKVEDTIRLGLRYDF 331
           Y      G+D  D  +       LGL + F
Sbjct: 293 YTNRDFEGVDTTDKFF------GLGLEHKF 316