Pairwise Alignments

Query, 331 a.a., porin from Vibrio cholerae E7946 ATCC 55056

Subject, 382 a.a., outer membrane pore protein N, non-specific from Klebsiella michiganensis M5al

 Score = 96.3 bits (238), Expect = 1e-24
 Identities = 95/398 (23%), Positives = 165/398 (41%), Gaps = 83/398 (20%)

Query: 1   MKKAAIAVAVLSAVVSGSTLAATVYDAEGTSLKVGGRLEFRGDFNGNDKGEEIEGTMLNK 60
           MK+  +A+ + + + +G+  +A +Y+ +G  L + G+++    F+ +   +       ++
Sbjct: 1   MKRKVLALVIPALLAAGAAHSAEIYNKDGNKLDLYGKVDGLHYFSDDSSKDG------DQ 54

Query: 61  SRVRLNVAGETDIGAGMKGFGFWEAEQGVKSSAGTSTEQETTFKQRYMYVGMK-GDFGSL 119
           S VRL   GET I   + G+G WE      ++ G+  +  T    R  + G+K  ++GS 
Sbjct: 55  SYVRLGFKGETQINDQLTGYGQWEYNVQANNTEGSDNQAWT----RLAFAGLKFANYGSF 110

Query: 120 SFGRQNTAGVQISDMSD-IGTFTGDQKAFVSAGN---EQINNTIAY----------GYDF 165
            +GR       +   +D +  F GD  ++  A N    + N    Y          G +F
Sbjct: 111 DYGRNYGVLYDVEGWTDMLPEFGGD--SYTQADNFMTGRANGVATYRNNDFFGLVNGLNF 168

Query: 166 E-SFKLKASYIADDQ---------------KNADGYGLSGIYSAPFGLDIGLGYAAND-- 207
              ++ K    + D+                N DG+GLS  Y    G+ I   Y+++D  
Sbjct: 169 ALQYQGKNENQSGDENQEGTANNNGRNVKNSNGDGFGLSSSYDLGMGVSIAAAYSSSDRT 228

Query: 208 --------LGTDKGSADQIIAGLGYTMGDLYFGATYTT-------GDKDDKADTEFTGIE 252
                    G DK  AD   AGL Y   ++Y    Y+        G+  D    +    E
Sbjct: 229 NEQTHYSTAGGDK--ADAWTAGLKYDANNIYLATMYSETRNMTPYGNNSDTIANKTQNFE 286

Query: 253 VSAQYKITKEFRLIAAYQNQEEETKNVT--------------KDKADFFELTGRYDFTKN 298
           V+AQY+   +F L  A    + + K++               KD   + ++   Y F +N
Sbjct: 287 VTAQYQF--DFGLRPAISYLQSKGKDLVMQGNAANPAGNTGDKDLVKYVDIGATYYFNRN 344

Query: 299 FRSYLAYKANGLDDKDA-----GYKVEDTIRLGLRYDF 331
             +Y+ YK N LD+ D+     G   +D + LGL Y F
Sbjct: 345 MSTYVDYKINLLDEDDSFYSNNGISTDDVVALGLVYQF 382