Pairwise Alignments

Query, 277 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 291 a.a., Transcriptional regulator, AraC family from Pseudomonas fluorescens FW300-N2E2

 Score = 73.6 bits (179), Expect = 5e-18
 Identities = 68/237 (28%), Positives = 105/237 (44%), Gaps = 19/237 (8%)

Query: 49  IERGAQSFYRTGGNHIAPQDSIILVNADEVHTGHSAVEGGWAYKAMYPLPEQFATVAKEI 108
           I  G  +F R   +     D + ++ A   H     + G      +Y   EQFA     +
Sbjct: 57  IAGGTGTFRRERPDTTGAPDKLCILPAG--HESAWVINGDIRLAHLYFSAEQFA-----L 109

Query: 109 GANTGAPYFPQAV-------VYDPELASQLR-LVFETLEKSTNRLLRETLIYASLVKLMT 160
           G  T     P+ V       + DP  A + R L+    ++   RLL  +L +  L  L+ 
Sbjct: 110 GCITLLDREPRQVQLHEETFLDDPRQAHRFRQLIALNWDEPGERLLTTSLAHDLLNHLLL 169

Query: 161 RH--GRTAPQADQPLSALRPLLLVKEFLDDFPQADVSLEELAQLAGLSPFHLVRTFQKQF 218
                R   +    L+A +  LLV +++D      +SL +LA L  LS +H  R F++ F
Sbjct: 170 SQVGQRQGLRLKGGLAAHQRRLLV-DYVDSHLADAISLGQLAALCALSEYHFARMFRESF 228

Query: 219 GLPPHAYQIQARLRLAKTLLK-QGVSISETAQECGFHDQSHLHRHFKKALGITPKQY 274
           GLPPH Y +  RL  A+ LL+     + + A  CGF   SH    F++ LG +P +Y
Sbjct: 229 GLPPHQYVLARRLTCARHLLRTTSQPLGDVALACGFASASHFTNRFRQTLGASPGEY 285