Pairwise Alignments

Query, 277 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 278 a.a., L-rhamnose operon transcriptional activator RhaR from Pseudomonas fluorescens FW300-N2E2

 Score =  136 bits (342), Expect = 6e-37
 Identities = 83/261 (31%), Positives = 132/261 (50%), Gaps = 12/261 (4%)

Query: 23  GLELLDAQYETQNFSRHSHEGYTVGVIERGAQSFYRTGGNHIAPQDSIILVNADEVHTGH 82
           G+E + A +E   +  H H+ Y VGV E+G Q F+     H +    + L+   E+H G+
Sbjct: 16  GIETVRAHFEGHAYDPHWHDTYLVGVTEQGVQQFHCRRQQHNSTPGKVFLLEPGELHDGN 75

Query: 83  SAVEGGWAYKAMYPLPEQFATVAK---EIGANTGAPYFPQAVVYDPELASQLRLVFETLE 139
           +  + G+ Y+ +Y  P+      +   ++  +     F   +  D  LAS   + F++L 
Sbjct: 76  APHDHGFTYRTLYLEPQWLERELRSLFDVAPDNAQLGFAATLTDDARLASATAMAFQSLH 135

Query: 140 KSTNRLLRETLIYASLVKLMTRH----GRTAPQADQPLSALRPLLLVKEFLDDFPQADVS 195
           +   R++R+T +   L  L T+H     R  P    PL A +     +++L      D+ 
Sbjct: 136 EQEIRIVRQTALDTLLANL-TQHLHWRARINPDPRLPLVAQQ----ARDYLHSHLSEDIG 190

Query: 196 LEELAQLAGLSPFHLVRTFQKQFGLPPHAYQIQARLRLAKTLLKQGVSISETAQECGFHD 255
           L++LAQ+AG+  F L R F+  FGL PHAY IQ RL  A+ LL +G S    A   GF D
Sbjct: 191 LDDLAQVAGVDRFRLTRAFKAAFGLAPHAYLIQLRLARARRLLARGESAVAVAAMLGFAD 250

Query: 256 QSHLHRHFKKALGITPKQYAR 276
           QSHL R F++A  ++P  Y +
Sbjct: 251 QSHLGRWFQRAYRLSPADYRK 271