Pairwise Alignments

Query, 277 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 268 a.a., AraC-type DNA-binding domain-containing proteins from Pseudomonas stutzeri RCH2

 Score =  106 bits (265), Expect = 5e-28
 Identities = 74/258 (28%), Positives = 123/258 (47%), Gaps = 9/258 (3%)

Query: 20  EFGGLELLDAQYETQNFSRHSHEGYTVGVIERGAQSF-YRTGGNHIAPQDSIILVNADEV 78
           E G  E L+A +    F+ H H+ Y +G    G   F YR    +  P D+ +L + DE+
Sbjct: 14  EPGRFERLEAYFAGYGFAPHRHDTYAIGCTVSGVHRFNYRKCARNSLPGDTFVL-HPDEL 72

Query: 79  HTGHSAVEGGWAYKAMYPLPEQFATVAKEIGANTGAPYFPQAVVYDPELASQLRLVFETL 138
           H G +  E G+ Y+A+Y  P   A +   +G     P+    V  DP L   +  + + L
Sbjct: 73  HDGEAGSEAGFRYRAVYIEP---ALLQGPLGGQP-LPFIDDGVSRDPRLQRAIGSLLQCL 128

Query: 139 EKSTNRLLRETLIYASLVKLMTRHGRTAPQADQPLSALRPLLLVKEFLDDFPQADVSLEE 198
           ++    L  +  +Y  L ++M +  RT  +  +     R     ++++ +F    +SL+E
Sbjct: 129 DRPLEGLEEQDALY-DLAQIMAKVART--KGRRRSVDFRAAERARDYIHEFLTQPISLDE 185

Query: 199 LAQLAGLSPFHLVRTFQKQFGLPPHAYQIQARLRLAKTLLKQGVSISETAQECGFHDQSH 258
           L +++    + L R F+  FG  P+ Y    RL   + LL  G + S+ A   GF DQSH
Sbjct: 186 LERVSDRDRWSLSRDFRALFGTSPYRYLTLRRLDQVRRLLLGGSAPSDAALIAGFVDQSH 245

Query: 259 LHRHFKKALGITPKQYAR 276
           + R FK+A G+ P  + R
Sbjct: 246 MSRQFKQAYGLPPGHWLR 263