Pairwise Alignments

Query, 277 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 273 a.a., transcriptional regulator, AraC/XylS family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  130 bits (328), Expect = 2e-35
 Identities = 86/258 (33%), Positives = 131/258 (50%), Gaps = 8/258 (3%)

Query: 23  GLELLDAQYETQNFSRHSHEGYTVGVIERGAQSFYRTGGNHIAPQDSIILVNADEVHTGH 82
           G+EL  A++   +F +H H  Y +GV+ +GAQ F   G  +   Q  +  +N DE H G 
Sbjct: 17  GIELSQAEFTHFSFDKHVHLDYHLGVVTQGAQQFINKGSRYQLGQHGLSTLNPDETHDGQ 76

Query: 83  SAVEGGWAYKAMYPLPEQFATVAKEIGANTGAPYFPQAVVYDPELASQLRLVFETL--EK 140
           S    G+  K M    +    +++E+G  T   +F  A + D     Q  +    L  ++
Sbjct: 77  SRDAEGYRVKVMSIPVDFMNAISQEMGQAT---HFFNAPMIDDSALYQYFIQLHNLLTQE 133

Query: 141 STNRLLRETLIYASLVKLMTRH--GRTAPQADQPLSALRPLLLVKEFLDDFPQADVSLEE 198
               L  E+ +   +  L+TRH  G      DQ LS L+ L L+K+ + D P  +  LE 
Sbjct: 134 QCTELAAESHLLNFMQLLLTRHPAGTLKLGQDQGLS-LQQLNLIKQKIHDEPWQNTQLEG 192

Query: 199 LAQLAGLSPFHLVRTFQKQFGLPPHAYQIQARLRLAKTLLKQGVSISETAQECGFHDQSH 258
           LA    LS F  +R F++  G+ PHAY  + RL LAK  L  G  + + AQ+ GF DQSH
Sbjct: 193 LANEVNLSKFQFLRQFKQATGMTPHAYLKRVRLELAKKSLTHGTLVVDVAQQLGFFDQSH 252

Query: 259 LHRHFKKALGITPKQYAR 276
           L++ FK+A  ++P Q+ R
Sbjct: 253 LNKAFKQAFLLSPVQFQR 270