Pairwise Alignments

Query, 209 a.a., LysE family translocator from Vibrio cholerae E7946 ATCC 55056

Subject, 207 a.a., transporter, LysE family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 78.2 bits (191), Expect = 1e-19
 Identities = 51/202 (25%), Positives = 98/202 (48%), Gaps = 8/202 (3%)

Query: 9   VYLTAVLALLLIPGPDMLLIASSSMSYGRRVGLFASLGNATSGMILTLLAALGVSALIAM 68
           +Y  A++ + + PGP  +L  S  + +G++  +   LG+ ++ +IL   +A G+ A+I+ 
Sbjct: 8   LYFFAIVLIGISPGPIAMLSMSHGIHFGKKRSIATGLGSVSAALILMAASAAGLGAIISA 67

Query: 69  NPLALNVLHLLGGAYLLKMAWDCLRADAAQAPTLD----EAQAVAKTFYQRALVSNLLNP 124
           +     +L   G AYL+ +    L     Q  TL+    E +   K  +++A +  + NP
Sbjct: 68  SEYGFTILKWCGAAYLVFLGIKLL-LTKQQGQTLEVVKTEGKGTLKQLFKQAFLVGISNP 126

Query: 125 KALVFFVLFLPQFVSTNIAASSAEQMFALGMVLNVCGLLFNLLLVALIGVFGRSLVDNQR 184
           K L+FF    PQF+  ++ A    Q+  L +   +    F ++  ++  V   SL  + +
Sbjct: 127 KDLLFFAALFPQFI--DLTAPQLPQLTILALTWALVDFSFVMIYASMANVLAPSLKASNK 184

Query: 185 FRTYQHKVMGAVFLLLALWMLS 206
              +  +  G VFL LA  ++S
Sbjct: 185 LHWFD-RTSGGVFLTLAAILVS 205